FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7739, 436 aa 1>>>pF1KB7739 436 - 436 aa - 436 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1588+/-0.000323; mu= 9.4370+/- 0.020 mean_var=127.8760+/-25.946, 0's: 0 Z-trim(119.5): 12 B-trim: 0 in 0/55 Lambda= 0.113417 statistics sampled from 33535 (33547) to 33535 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.393), width: 16 Scan time: 9.730 The best scores are: opt bits E(85289) NP_003634 (OMIM: 603715) chorion-specific transcri ( 436) 3090 516.7 4.8e-146 XP_016866879 (OMIM: 603715) PREDICTED: chorion-spe ( 498) 3090 516.7 5.3e-146 NP_004743 (OMIM: 146200,603716) chorion-specific t ( 506) 824 145.9 2.2e-34 >>NP_003634 (OMIM: 603715) chorion-specific transcriptio (436 aa) initn: 3090 init1: 3090 opt: 3090 Z-score: 2743.0 bits: 516.7 E(85289): 4.8e-146 Smith-Waterman score: 3090; 100.0% identity (100.0% similar) in 436 aa overlap (1-436:1-436) 10 20 30 40 50 60 pF1KB7 MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 MRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPNCDGPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPNCDGPL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 KLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTAPSSVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 KLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTAPSSVS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 LSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDCFSFSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDCFSFSK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 SYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASGVYSDHGDLQAWSKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASGVYSDHGDLQAWSKN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 AALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWPNPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 AALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWPNPA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB7 GNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPHQQYSLPSKSSKWDFEEEMTYLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 GNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPHQQYSLPSKSSKWDFEEEMTYLG 370 380 390 400 410 420 430 pF1KB7 LDHCNNDMLLNLCPLR :::::::::::::::: NP_003 LDHCNNDMLLNLCPLR 430 >>XP_016866879 (OMIM: 603715) PREDICTED: chorion-specifi (498 aa) initn: 3090 init1: 3090 opt: 3090 Z-score: 2742.1 bits: 516.7 E(85289): 5.3e-146 Smith-Waterman score: 3090; 100.0% identity (100.0% similar) in 436 aa overlap (1-436:63-498) 10 20 30 pF1KB7 MEPDDFDSEDKEILSWDINDVKLPQNVKKT :::::::::::::::::::::::::::::: XP_016 QLYQEPLRTKFSSISEGSRIGENLGWPDLIMEPDDFDSEDKEILSWDINDVKLPQNVKKT 40 50 60 70 80 90 40 50 60 70 80 90 pF1KB7 DWFQEWPDSYAKHIYSSEDKNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCGRDCLAEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DWFQEWPDSYAKHIYSSEDKNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCGRDCLAEE 100 110 120 130 140 150 100 110 120 130 140 150 pF1KB7 GRKIYLRPAICDKARQKQQRKRCPNCDGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GRKIYLRPAICDKARQKQQRKRCPNCDGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKG 160 170 180 190 200 210 160 170 180 190 200 210 pF1KB7 EHDHPKPETKLEAEARRAMKKVNTAPSSVSLSLKGSTETRSLPGETQSQGSLPLTWSFQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EHDHPKPETKLEAEARRAMKKVNTAPSSVSLSLKGSTETRSLPGETQSQGSLPLTWSFQE 220 230 240 250 260 270 220 230 240 250 260 270 pF1KB7 GVQLPGSYSGHLIANTPQQNSLNDCFSFSKSYGLGGITDLTDQTSTVDPMKLYEKRKLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GVQLPGSYSGHLIANTPQQNSLNDCFSFSKSYGLGGITDLTDQTSTVDPMKLYEKRKLSS 280 290 300 310 320 330 280 290 300 310 320 330 pF1KB7 SRTYSSGDLLPPSASGVYSDHGDLQAWSKNAALGRNHLADNCYSNYPFPLTSWPCSFSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SRTYSSGDLLPPSASGVYSDHGDLQAWSKNAALGRNHLADNCYSNYPFPLTSWPCSFSPS 340 350 360 370 380 390 340 350 360 370 380 390 pF1KB7 QNSSEPFYQQLPLEPPAAKTGCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QNSSEPFYQQLPLEPPAAKTGCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFL 400 410 420 430 440 450 400 410 420 430 pF1KB7 FTYASHPHQQYSLPSKSSKWDFEEEMTYLGLDHCNNDMLLNLCPLR :::::::::::::::::::::::::::::::::::::::::::::: XP_016 FTYASHPHQQYSLPSKSSKWDFEEEMTYLGLDHCNNDMLLNLCPLR 460 470 480 490 >>NP_004743 (OMIM: 146200,603716) chorion-specific trans (506 aa) initn: 824 init1: 797 opt: 824 Z-score: 738.2 bits: 145.9 E(85289): 2.2e-34 Smith-Waterman score: 838; 39.2% identity (61.1% similar) in 388 aa overlap (14-384:19-397) 10 20 30 40 50 pF1KB7 MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRH ::::::: ..::.. : :.::::.:.. ::::..:.:::: NP_004 MPAAAVQEAVGVCSYGMQLSWDINDPQMPQELALFDQFREWPDGYVRFIYSSDEKKAQRH 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB7 LSSWAMRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPN ::.::::::::::..:::::::::::: . : .: .. :::::::::: :::.: ::: NP_004 LSGWAMRNTNNHNGHILKKSCLGVVVCTQACTLPDGSRLQLRPAICDKARLKQQKKACPN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB7 CDGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTA : . :.:::::::.:.::::::: :: ::::.:: ::::.::.: :.::::. : . : NP_004 CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSAIKRQMA 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB7 PSSVSLSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDC :. . . : :.... . . :.. : . . ....: . : NP_004 ----SFYQPQKKRIR----ESEAEENQDSSGHFSNIPPLENPEDFDIVTETSFPIPGQPC 190 200 210 220 230 240 250 260 270 280 pF1KB7 FSFSKSYGLGGITDL-TDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASG------VY :: :: . :: : : . . :.. : . .. : : .: :. .. .: NP_004 PSFPKSDVYKATCDLATFQGDKMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLY 240 250 260 270 280 290 290 300 310 320 330 pF1KB7 SDHGDLQAWSKNAALGRNHLADNCYSNYP--FPLTS----W-PCSFSPS--QNSSEPFYQ .: .. . . :. . : ::.: : .:. : : .:: . ... .: NP_004 KDSTSIPNDTDWVHLNTLQCNVNSYSSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQ 300 310 320 330 340 350 340 350 360 370 380 390 pF1KB7 QLPLEPP-AAKTGCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPH . .: . : : : : . : . .. :. ::. : NP_004 AMATRPYYNPELPCRYLTTPPPGAPALQTV-ITTTTKVSYQAYQPPAMKYSDSVREVKSL 360 370 380 390 400 410 400 410 420 430 pF1KB7 QQYSLPSKSSKWDFEEEMTYLGLDHCNNDMLLNLCPLR NP_004 SSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEPVSSR 420 430 440 450 460 470 436 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:40:20 2016 done: Sun Nov 6 05:40:21 2016 Total Scan time: 9.730 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]