FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7739, 436 aa 1>>>pF1KB7739 436 - 436 aa - 436 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9346+/-0.000773; mu= 10.5381+/- 0.047 mean_var=109.9984+/-21.847, 0's: 0 Z-trim(112.0): 15 B-trim: 65 in 1/51 Lambda= 0.122287 statistics sampled from 12869 (12875) to 12869 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.395), width: 16 Scan time: 3.350 The best scores are: opt bits E(32554) CCDS4950.1 GCM1 gene_id:8521|Hs108|chr6 ( 436) 3090 555.6 3.6e-158 CCDS4517.1 GCM2 gene_id:9247|Hs108|chr6 ( 506) 824 155.8 8.9e-38 >>CCDS4950.1 GCM1 gene_id:8521|Hs108|chr6 (436 aa) initn: 3090 init1: 3090 opt: 3090 Z-score: 2953.2 bits: 555.6 E(32554): 3.6e-158 Smith-Waterman score: 3090; 100.0% identity (100.0% similar) in 436 aa overlap (1-436:1-436) 10 20 30 40 50 60 pF1KB7 MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 MRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPNCDGPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 MRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPNCDGPL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 KLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTAPSSVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 KLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTAPSSVS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 LSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDCFSFSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 LSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDCFSFSK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 SYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASGVYSDHGDLQAWSKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 SYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASGVYSDHGDLQAWSKN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 AALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWPNPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 AALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWPNPA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB7 GNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPHQQYSLPSKSSKWDFEEEMTYLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 GNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPHQQYSLPSKSSKWDFEEEMTYLG 370 380 390 400 410 420 430 pF1KB7 LDHCNNDMLLNLCPLR :::::::::::::::: CCDS49 LDHCNNDMLLNLCPLR 430 >>CCDS4517.1 GCM2 gene_id:9247|Hs108|chr6 (506 aa) initn: 824 init1: 797 opt: 824 Z-score: 791.7 bits: 155.8 E(32554): 8.9e-38 Smith-Waterman score: 838; 39.2% identity (61.1% similar) in 388 aa overlap (14-384:19-397) 10 20 30 40 50 pF1KB7 MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRH ::::::: ..::.. : :.::::.:.. ::::..:.:::: CCDS45 MPAAAVQEAVGVCSYGMQLSWDINDPQMPQELALFDQFREWPDGYVRFIYSSDEKKAQRH 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB7 LSSWAMRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPN ::.::::::::::..:::::::::::: . : .: .. :::::::::: :::.: ::: CCDS45 LSGWAMRNTNNHNGHILKKSCLGVVVCTQACTLPDGSRLQLRPAICDKARLKQQKKACPN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB7 CDGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTA : . :.:::::::.:.::::::: :: ::::.:: ::::.::.: :.::::. : . : CCDS45 CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSAIKRQMA 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB7 PSSVSLSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDC :. . . : :.... . . :.. : . . ....: . : CCDS45 ----SFYQPQKKRIR----ESEAEENQDSSGHFSNIPPLENPEDFDIVTETSFPIPGQPC 190 200 210 220 230 240 250 260 270 280 pF1KB7 FSFSKSYGLGGITDL-TDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASG------VY :: :: . :: : : . . :.. : . .. : : .: :. .. .: CCDS45 PSFPKSDVYKATCDLATFQGDKMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLY 240 250 260 270 280 290 290 300 310 320 330 pF1KB7 SDHGDLQAWSKNAALGRNHLADNCYSNYP--FPLTS----W-PCSFSPS--QNSSEPFYQ .: .. . . :. . : ::.: : .:. : : .:: . ... .: CCDS45 KDSTSIPNDTDWVHLNTLQCNVNSYSSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQ 300 310 320 330 340 350 340 350 360 370 380 390 pF1KB7 QLPLEPP-AAKTGCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPH . .: . : : : : . : . .. :. ::. : CCDS45 AMATRPYYNPELPCRYLTTPPPGAPALQTV-ITTTTKVSYQAYQPPAMKYSDSVREVKSL 360 370 380 390 400 410 400 410 420 430 pF1KB7 QQYSLPSKSSKWDFEEEMTYLGLDHCNNDMLLNLCPLR CCDS45 SSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEPVSSR 420 430 440 450 460 470 436 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:40:19 2016 done: Sun Nov 6 05:40:20 2016 Total Scan time: 3.350 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]