FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1640, 155 aa 1>>>pF1KE1640 155 - 155 aa - 155 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3789+/-0.000612; mu= 11.2675+/- 0.037 mean_var=62.1233+/-12.291, 0's: 0 Z-trim(111.2): 8 B-trim: 0 in 0/52 Lambda= 0.162722 statistics sampled from 12215 (12222) to 12215 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.375), width: 16 Scan time: 1.610 The best scores are: opt bits E(32554) CCDS4937.1 IL17A gene_id:3605|Hs108|chr6 ( 155) 1077 260.6 2.7e-70 CCDS4938.1 IL17F gene_id:112744|Hs108|chr6 ( 163) 431 109.0 1.3e-24 >>CCDS4937.1 IL17A gene_id:3605|Hs108|chr6 (155 aa) initn: 1077 init1: 1077 opt: 1077 Z-score: 1375.4 bits: 260.6 E(32554): 2.7e-70 Smith-Waterman score: 1077; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155) 10 20 30 40 50 60 pF1KE1 MTPGKTSLVSLLLLLSLEAIVKAGITIPRNPGCPNSEDKNFPRTVMVNLNIHNRNTNTNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 MTPGKTSLVSLLLLLSLEAIVKAGITIPRNPGCPNSEDKNFPRTVMVNLNIHNRNTNTNP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 KRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEIL 70 80 90 100 110 120 130 140 150 pF1KE1 VLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHVA ::::::::::::::::::::::::::::::::::: CCDS49 VLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHVA 130 140 150 >>CCDS4938.1 IL17F gene_id:112744|Hs108|chr6 (163 aa) initn: 411 init1: 411 opt: 431 Z-score: 555.4 bits: 109.0 E(32554): 1.3e-24 Smith-Waterman score: 431; 49.0% identity (68.2% similar) in 151 aa overlap (7-154:18-162) 10 20 30 40 pF1KE1 MTPGKTSLVSLLLLLSLEA--IVKAGITIPRNP-GCPNSEDKNFPRTVM :...: .: : : :.: :. ..: .:: : : CCDS49 MTVKTLHGPAMVKYLLLSILGLAFLSEAAARKIPKVGHTFFQKPESCPP-----VPGGSM 10 20 30 40 50 50 60 70 80 90 100 pF1KE1 VNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNV .:.: : : . : . .::::::: . ::.:::: . .:.::.::::::.:. CCDS49 -KLDIGIINENQRVSMSRNIESRSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINAQGKE 60 70 80 90 100 110 110 120 130 140 150 pF1KE1 DYHMNSVPIQQEILVLRREPPHCPNSFRLEKILVSVGCTCVTPIVHHVA : ::::::::: ::.::. : ::.:::.::.::::::::..::: CCDS49 DISMNSVPIQQETLVVRRKHQGCSVSFQLEKVLVTVGCTCVTPVIHHVQ 120 130 140 150 160 155 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:48:25 2016 done: Sun Nov 6 16:48:26 2016 Total Scan time: 1.610 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]