FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9607, 268 aa 1>>>pF1KE9607 268 - 268 aa - 268 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1957+/-0.000467; mu= 2.1134+/- 0.029 mean_var=180.5088+/-35.595, 0's: 0 Z-trim(115.0): 22 B-trim: 0 in 0/52 Lambda= 0.095461 statistics sampled from 25169 (25185) to 25169 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.295), width: 16 Scan time: 6.810 The best scores are: opt bits E(85289) NP_060602 (OMIM: 611506) centromere protein Q [Hom ( 268) 1663 241.2 1.6e-63 XP_005249262 (OMIM: 611506) PREDICTED: centromere ( 268) 1663 241.2 1.6e-63 XP_011513025 (OMIM: 611506) PREDICTED: centromere ( 271) 1457 212.8 5.5e-55 >>NP_060602 (OMIM: 611506) centromere protein Q [Homo sa (268 aa) initn: 1663 init1: 1663 opt: 1663 Z-score: 1261.6 bits: 241.2 E(85289): 1.6e-63 Smith-Waterman score: 1663; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268) 10 20 30 40 50 60 pF1KE9 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 KHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 KHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 CETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 CETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 NKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNALLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 NKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNALLK 190 200 210 220 230 240 250 260 pF1KE9 DLDILHNSSQMKSMSTFIEEAYKKLDAS :::::::::::::::::::::::::::: NP_060 DLDILHNSSQMKSMSTFIEEAYKKLDAS 250 260 >>XP_005249262 (OMIM: 611506) PREDICTED: centromere prot (268 aa) initn: 1663 init1: 1663 opt: 1663 Z-score: 1261.6 bits: 241.2 E(85289): 1.6e-63 Smith-Waterman score: 1663; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268) 10 20 30 40 50 60 pF1KE9 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 KHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 CETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 NKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNALLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNALLK 190 200 210 220 230 240 250 260 pF1KE9 DLDILHNSSQMKSMSTFIEEAYKKLDAS :::::::::::::::::::::::::::: XP_005 DLDILHNSSQMKSMSTFIEEAYKKLDAS 250 260 >>XP_011513025 (OMIM: 611506) PREDICTED: centromere prot (271 aa) initn: 1457 init1: 1457 opt: 1457 Z-score: 1108.2 bits: 212.8 E(85289): 5.5e-55 Smith-Waterman score: 1457; 98.3% identity (98.8% similar) in 240 aa overlap (29-268:32-271) 10 20 30 40 50 pF1KE9 MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHT : :. :::::::::::::::::::::::: XP_011 PVSAFFPPTSGSPLFTNVWARITLSAALRRVQEESVVRNTVKKNKNHLKDLSSEGQTKHT 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 NLKHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NLKHGKTAASKRKTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 QQCETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QQCETLKVPPKKMEDLTNVSSLLNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQS 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE9 LKNKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LKNKIQILASEVEEEEERVKQMHQINSSGVLSLPELSQKTLKAPTLQKEILALIPNQNAL 190 200 210 220 230 240 240 250 260 pF1KE9 LKDLDILHNSSQMKSMSTFIEEAYKKLDAS :::::::::::::::::::::::::::::: XP_011 LKDLDILHNSSQMKSMSTFIEEAYKKLDAS 250 260 270 268 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:27:06 2016 done: Sun Nov 6 06:27:07 2016 Total Scan time: 6.810 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]