FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6662, 276 aa 1>>>pF1KE6662 276 - 276 aa - 276 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9851+/-0.000361; mu= 16.6535+/- 0.022 mean_var=61.5850+/-12.248, 0's: 0 Z-trim(112.6): 20 B-trim: 0 in 0/55 Lambda= 0.163432 statistics sampled from 21625 (21636) to 21625 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.254), width: 16 Scan time: 6.460 The best scores are: opt bits E(85289) NP_689945 (OMIM: 612648,612650) radial spoke head ( 276) 1809 435.0 7.2e-122 XP_005248958 (OMIM: 612648,612650) PREDICTED: radi ( 321) 1460 352.8 4.8e-97 XP_016865915 (OMIM: 612648,612650) PREDICTED: radi ( 179) 1136 276.2 3e-74 NP_001180270 (OMIM: 612648,612650) radial spoke he ( 306) 854 209.9 4.8e-54 XP_006715077 (OMIM: 612648,612650) PREDICTED: radi ( 140) 480 121.5 8.8e-28 >>NP_689945 (OMIM: 612648,612650) radial spoke head prot (276 aa) initn: 1809 init1: 1809 opt: 1809 Z-score: 2308.9 bits: 435.0 E(85289): 7.2e-122 Smith-Waterman score: 1809; 100.0% identity (100.0% similar) in 276 aa overlap (1-276:1-276) 10 20 30 40 50 60 pF1KE6 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR 190 200 210 220 230 240 250 260 270 pF1KE6 SLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML :::::::::::::::::::::::::::::::::::: NP_689 SLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML 250 260 270 >>XP_005248958 (OMIM: 612648,612650) PREDICTED: radial s (321 aa) initn: 1460 init1: 1460 opt: 1460 Z-score: 1863.3 bits: 352.8 E(85289): 4.8e-97 Smith-Waterman score: 1460; 93.1% identity (95.9% similar) in 245 aa overlap (1-245:1-245) 10 20 30 40 50 60 pF1KE6 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR ::::::::::::::::::::::::::::::::::::::::::::: .. . . :. XP_005 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSEAVVQGDFTWLLSRC 190 200 210 220 230 240 250 260 270 pF1KE6 SLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML .. :: XP_005 GFGWPCSWDSCSVSMRVLEHPDGEGQCPGGAAQPALAGPHLLPCSPHQELWLRLRGHWRE 250 260 270 280 290 300 >>XP_016865915 (OMIM: 612648,612650) PREDICTED: radial s (179 aa) initn: 1136 init1: 1136 opt: 1136 Z-score: 1454.1 bits: 276.2 E(85289): 3e-74 Smith-Waterman score: 1136; 98.9% identity (98.9% similar) in 179 aa overlap (1-179:1-179) 10 20 30 40 50 60 pF1KE6 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: XP_016 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGSLLS 130 140 150 160 170 190 200 210 220 230 240 pF1KE6 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR >>NP_001180270 (OMIM: 612648,612650) radial spoke head p (306 aa) initn: 854 init1: 854 opt: 854 Z-score: 1091.3 bits: 209.9 E(85289): 4.8e-54 Smith-Waterman score: 1333; 86.9% identity (89.8% similar) in 245 aa overlap (1-245:1-230) 10 20 30 40 50 60 pF1KE6 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE ::::::::::: :::::::::::::::::::::::::::::::::: NP_001 EGEKVFEEEIV---------------IDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE 130 140 150 160 190 200 210 220 230 240 pF1KE6 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR ::::::::::::::::::::::::::::::::::::::::::::: .. . . :. NP_001 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSEAVVQGDFTWLLSRC 170 180 190 200 210 220 250 260 270 pF1KE6 SLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML .. :: NP_001 GFGWPCSWDSCSVSMRVLEHPDGEGQCPGGAAQPALAGPHLLPCSPHQELWLRLRGHWRE 230 240 250 260 270 280 >>XP_006715077 (OMIM: 612648,612650) PREDICTED: radial s (140 aa) initn: 496 init1: 480 opt: 480 Z-score: 619.7 bits: 121.5 E(85289): 8.8e-28 Smith-Waterman score: 480; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75) 10 20 30 40 50 60 pF1KE6 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN ::::::::::::::: XP_006 QGLSEDQLAPRKTLYRSRSRKRPAWCLSLTRLTRLWPSSPEAPSSRPLLDPPMSIGPLKD 70 80 90 100 110 120 276 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:12:49 2016 done: Tue Nov 8 15:12:50 2016 Total Scan time: 6.460 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]