FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6662, 276 aa 1>>>pF1KE6662 276 - 276 aa - 276 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2527+/-0.000867; mu= 15.0394+/- 0.052 mean_var=60.5080+/-12.072, 0's: 0 Z-trim(105.9): 16 B-trim: 172 in 1/49 Lambda= 0.164880 statistics sampled from 8688 (8694) to 8688 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.267), width: 16 Scan time: 2.180 The best scores are: opt bits E(32554) CCDS4905.1 RSPH9 gene_id:221421|Hs108|chr6 ( 276) 1809 438.7 2.2e-123 CCDS55005.1 RSPH9 gene_id:221421|Hs108|chr6 ( 306) 854 211.5 5.8e-55 >>CCDS4905.1 RSPH9 gene_id:221421|Hs108|chr6 (276 aa) initn: 1809 init1: 1809 opt: 1809 Z-score: 2328.6 bits: 438.7 E(32554): 2.2e-123 Smith-Waterman score: 1809; 100.0% identity (100.0% similar) in 276 aa overlap (1-276:1-276) 10 20 30 40 50 60 pF1KE6 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR 190 200 210 220 230 240 250 260 270 pF1KE6 SLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML :::::::::::::::::::::::::::::::::::: CCDS49 SLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML 250 260 270 >>CCDS55005.1 RSPH9 gene_id:221421|Hs108|chr6 (306 aa) initn: 854 init1: 854 opt: 854 Z-score: 1100.2 bits: 211.5 E(32554): 5.8e-55 Smith-Waterman score: 1333; 86.9% identity (89.8% similar) in 245 aa overlap (1-245:1-230) 10 20 30 40 50 60 pF1KE6 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MDADSLLLSLELASGSGQGLSPDRRASLLTSLMLVKRDYRYDRVLFWGRILGLVADYYIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 QGLSEDQLAPRKTLYSLNCTEWSLLPPATEEMVAQSSVVKGRFMGDPSYEYEHTELQKVN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EGEKVFEEEIVVQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE ::::::::::: :::::::::::::::::::::::::::::::::: CCDS55 EGEKVFEEEIV---------------IDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSE 130 140 150 160 190 200 210 220 230 240 pF1KE6 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSWSIQMERGNALVVLR ::::::::::::::::::::::::::::::::::::::::::::: .. . . :. CCDS55 AKKLSSYFHFREPVELKNKTLLEKADLDPSLDFMDSLEHDIPKGSEAVVQGDFTWLLSRC 170 180 190 200 210 220 250 260 270 pF1KE6 SLLWPGLTFYHAPRTKNYGYVYVGTGEKNMDLPFML .. :: CCDS55 GFGWPCSWDSCSVSMRVLEHPDGEGQCPGGAAQPALAGPHLLPCSPHQELWLRLRGHWRE 230 240 250 260 270 280 276 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:12:48 2016 done: Tue Nov 8 15:12:48 2016 Total Scan time: 2.180 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]