FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6533, 112 aa 1>>>pF1KE6533 112 - 112 aa - 112 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1738+/-0.000305; mu= 10.2609+/- 0.019 mean_var=67.5214+/-12.934, 0's: 0 Z-trim(117.4): 22 B-trim: 75 in 2/47 Lambda= 0.156082 statistics sampled from 29404 (29425) to 29404 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.345), width: 16 Scan time: 3.930 The best scores are: opt bits E(85289) NP_001823 (OMIM: 120105) colipase isoform 1 prepro ( 112) 763 180.0 7e-46 NP_001239526 (OMIM: 120105) colipase isoform 2 [Ho ( 98) 598 142.8 9.7e-35 NP_001239527 (OMIM: 120105) colipase isoform 3 pre ( 71) 308 77.4 3.4e-15 >>NP_001823 (OMIM: 120105) colipase isoform 1 preproprot (112 aa) initn: 763 init1: 763 opt: 763 Z-score: 944.6 bits: 180.0 E(85289): 7e-46 Smith-Waterman score: 763; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112) 10 20 30 40 50 60 pF1KE6 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ 70 80 90 100 110 >>NP_001239526 (OMIM: 120105) colipase isoform 2 [Homo s (98 aa) initn: 596 init1: 596 opt: 598 Z-score: 744.7 bits: 142.8 E(85289): 9.7e-35 Smith-Waterman score: 598; 91.5% identity (92.6% similar) in 94 aa overlap (19-112:5-98) 10 20 30 40 50 60 pF1KE6 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA : : . :::::::::::::::::::::::::::::::: NP_001 MILLPQPPKKLGLQENGELCMNSAQCKSNCCQHSSALGLARCTSMA 10 20 30 40 70 80 90 100 110 pF1KE6 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ 50 60 70 80 90 >>NP_001239527 (OMIM: 120105) colipase isoform 3 preprop (71 aa) initn: 461 init1: 308 opt: 308 Z-score: 393.8 bits: 77.4 E(85289): 3.4e-15 Smith-Waterman score: 383; 63.4% identity (63.4% similar) in 112 aa overlap (1-112:1-71) 10 20 30 40 50 60 pF1KE6 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA :::::::::::::::::::::::::::: NP_001 MEKILILLLVALSVAYAAPGPRGIIINL-------------------------------- 10 20 70 80 90 100 110 pF1KE6 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ ::::::::::::::::::::::::::::::::::::::::::: NP_001 ---------TLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ 30 40 50 60 70 112 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:10:21 2016 done: Tue Nov 8 14:10:22 2016 Total Scan time: 3.930 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]