FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6533, 112 aa
  1>>>pF1KE6533 112 - 112 aa - 112 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7793+/-0.000689; mu= 12.7506+/- 0.041
 mean_var=72.2055+/-13.639, 0's: 0 Z-trim(111.0): 23  B-trim: 43 in 1/49
 Lambda= 0.150935
 statistics sampled from 12056 (12067) to 12056 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.371), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS4811.1 CLPS gene_id:1208|Hs108|chr6            ( 112)  763 174.3 1.3e-44
CCDS75437.1 CLPS gene_id:1208|Hs108|chr6           (  98)  598 138.4   8e-34
CCDS75438.1 CLPS gene_id:1208|Hs108|chr6           (  71)  308 75.1 6.5e-15


>>CCDS4811.1 CLPS gene_id:1208|Hs108|chr6                 (112 aa)
 initn: 763 init1: 763 opt: 763  Z-score: 914.1  bits: 174.3 E(32554): 1.3e-44
Smith-Waterman score: 763; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KE6 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KE6 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
               70        80        90       100       110  

>>CCDS75437.1 CLPS gene_id:1208|Hs108|chr6                (98 aa)
 initn: 596 init1: 596 opt: 598  Z-score: 720.7  bits: 138.4 E(32554): 8e-34
Smith-Waterman score: 598; 91.5% identity (92.6% similar) in 94 aa overlap (19-112:5-98)

               10        20        30        40        50        60
pF1KE6 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA
                         : :   .   ::::::::::::::::::::::::::::::::
CCDS75               MILLPQPPKKLGLQENGELCMNSAQCKSNCCQHSSALGLARCTSMA
                             10        20        30        40      

               70        80        90       100       110  
pF1KE6 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
         50        60        70        80        90        

>>CCDS75438.1 CLPS gene_id:1208|Hs108|chr6                (71 aa)
 initn: 461 init1: 308 opt: 308  Z-score: 381.2  bits: 75.1 E(32554): 6.5e-15
Smith-Waterman score: 383; 63.4% identity (63.4% similar) in 112 aa overlap (1-112:1-71)

               10        20        30        40        50        60
pF1KE6 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA
       ::::::::::::::::::::::::::::                                
CCDS75 MEKILILLLVALSVAYAAPGPRGIIINL--------------------------------
               10        20                                        

               70        80        90       100       110  
pF1KE6 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
                :::::::::::::::::::::::::::::::::::::::::::
CCDS75 ---------TLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
                30        40        50        60        70 




112 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:10:20 2016 done: Tue Nov  8 14:10:21 2016
 Total Scan time:  1.390 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]