FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6558, 156 aa 1>>>pF1KE6558 156 - 156 aa - 156 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6555+/-0.000257; mu= 11.9971+/- 0.016 mean_var=76.4350+/-15.274, 0's: 0 Z-trim(121.5): 5 B-trim: 0 in 0/60 Lambda= 0.146699 statistics sampled from 38191 (38196) to 38191 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.448), width: 16 Scan time: 4.600 The best scores are: opt bits E(85289) NP_001014838 (OMIM: 616953) protein CutA isoform 2 ( 156) 1002 220.0 1.2e-57 NP_057005 (OMIM: 616953) protein CutA isoform 2 pr ( 156) 1002 220.0 1.2e-57 NP_001014837 (OMIM: 616953) protein CutA isoform 2 ( 156) 1002 220.0 1.2e-57 NP_001014840 (OMIM: 616953) protein CutA isoform 3 ( 179) 1002 220.1 1.3e-57 NP_001014433 (OMIM: 616953) protein CutA isoform 1 ( 198) 1002 220.1 1.5e-57 >>NP_001014838 (OMIM: 616953) protein CutA isoform 2 pre (156 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1156.0 bits: 220.0 E(85289): 1.2e-57 Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156) 10 20 30 40 50 60 pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY 70 80 90 100 110 120 130 140 150 pF1KE6 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP :::::::::::::::::::::::::::::::::::: NP_001 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 130 140 150 >>NP_057005 (OMIM: 616953) protein CutA isoform 2 precur (156 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1156.0 bits: 220.0 E(85289): 1.2e-57 Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156) 10 20 30 40 50 60 pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY 70 80 90 100 110 120 130 140 150 pF1KE6 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP :::::::::::::::::::::::::::::::::::: NP_057 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 130 140 150 >>NP_001014837 (OMIM: 616953) protein CutA isoform 2 pre (156 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1156.0 bits: 220.0 E(85289): 1.2e-57 Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156) 10 20 30 40 50 60 pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY 70 80 90 100 110 120 130 140 150 pF1KE6 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP :::::::::::::::::::::::::::::::::::: NP_001 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 130 140 150 >>NP_001014840 (OMIM: 616953) protein CutA isoform 3 pre (179 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1155.1 bits: 220.1 E(85289): 1.3e-57 Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:24-179) 10 20 30 pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG ::::::::::::::::::::::::::::::::::::: NP_001 MSGGRAPAVLLGGVASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 130 140 150 160 170 >>NP_001014433 (OMIM: 616953) protein CutA isoform 1 [Ho (198 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1154.4 bits: 220.1 E(85289): 1.5e-57 Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:43-198) 10 20 30 pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQP :::::::::::::::::::::::::::::: NP_001 GGPSSTVTWCALFSNHVAATQASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQP 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE6 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE6 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSD 140 150 160 170 180 190 pF1KE6 SITVLP :::::: NP_001 SITVLP 156 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:24:05 2016 done: Tue Nov 8 14:24:06 2016 Total Scan time: 4.600 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]