FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6558, 156 aa 1>>>pF1KE6558 156 - 156 aa - 156 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7021+/-0.000567; mu= 11.6898+/- 0.035 mean_var=76.3804+/-15.032, 0's: 0 Z-trim(113.9): 5 B-trim: 0 in 0/54 Lambda= 0.146752 statistics sampled from 14528 (14531) to 14528 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.446), width: 16 Scan time: 1.840 The best scores are: opt bits E(32554) CCDS4779.1 CUTA gene_id:51596|Hs108|chr6 ( 156) 1002 220.1 4.3e-58 CCDS34433.1 CUTA gene_id:51596|Hs108|chr6 ( 179) 1002 220.2 4.8e-58 CCDS34432.1 CUTA gene_id:51596|Hs108|chr6 ( 198) 1002 220.2 5.2e-58 >>CCDS4779.1 CUTA gene_id:51596|Hs108|chr6 (156 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1156.5 bits: 220.1 E(32554): 4.3e-58 Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156) 10 20 30 40 50 60 pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 IARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPY 70 80 90 100 110 120 130 140 150 pF1KE6 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP :::::::::::::::::::::::::::::::::::: CCDS47 EVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 130 140 150 >>CCDS34433.1 CUTA gene_id:51596|Hs108|chr6 (179 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1155.6 bits: 220.2 E(32554): 4.8e-58 Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:24-179) 10 20 30 pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG ::::::::::::::::::::::::::::::::::::: CCDS34 MSGGRAPAVLLGGVASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSG 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVL 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSDSITVLP 130 140 150 160 170 >>CCDS34432.1 CUTA gene_id:51596|Hs108|chr6 (198 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1154.9 bits: 220.2 E(32554): 5.2e-58 Smith-Waterman score: 1002; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:43-198) 10 20 30 pF1KE6 MPALLPVASRLLLLPRVLLTMASGSPPTQP :::::::::::::::::::::::::::::: CCDS34 GGPSSTVTWCALFSNHVAATQASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQP 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE6 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE6 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTESVSD 140 150 160 170 180 190 pF1KE6 SITVLP :::::: CCDS34 SITVLP 156 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:24:04 2016 done: Tue Nov 8 14:24:04 2016 Total Scan time: 1.840 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]