FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6663, 285 aa
  1>>>pF1KE6663 285 - 285 aa - 285 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5364+/-0.000608; mu= 14.8504+/- 0.037
 mean_var=73.5624+/-14.750, 0's: 0 Z-trim(112.6): 8  B-trim: 35 in 1/52
 Lambda= 0.149536
 statistics sampled from 13365 (13369) to 13365 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.411), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS4718.1 DDAH2 gene_id:23564|Hs108|chr6          ( 285) 1901 418.6 2.6e-117
CCDS705.1 DDAH1 gene_id:23576|Hs108|chr1           ( 285)  899 202.4 3.1e-52
CCDS81348.1 DDAH1 gene_id:23576|Hs108|chr1         ( 185)  633 144.9 4.1e-35
CCDS44170.1 DDAH1 gene_id:23576|Hs108|chr1         ( 182)  623 142.8 1.8e-34


>>CCDS4718.1 DDAH2 gene_id:23564|Hs108|chr6               (285 aa)
 initn: 1901 init1: 1901 opt: 1901  Z-score: 2219.6  bits: 418.6 E(32554): 2.6e-117
Smith-Waterman score: 1901; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)

               10        20        30        40        50        60
pF1KE6 MGTPGEGLGRCSHALIRGVPESLASGEGAGAGLPALDLAKAQREHGVLGGKLRQRLGLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGTPGEGLGRCSHALIRGVPESLASGEGAGAGLPALDLAKAQREHGVLGGKLRQRLGLQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LELPPEESLPLGPLLGDTAVIQGDTALITRPWSPARRPEVDGVRKALQDLGLRIVEIGDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LELPPEESLPLGPLLGDTAVIQGDTALITRPWSPARRPEVDGVRKALQDLGLRIVEIGDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 NATLDGTDVLFTGREFFVGLSKWTNHRGAEIVADTFRDFAVSTVPVSGPSHLRGLCGMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NATLDGTDVLFTGREFFVGLSKWTNHRGAEIVADTFRDFAVSTVPVSGPSHLRGLCGMGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 PRTVVAGSSDAAQKAVRAMAVLTDHPYASLTLPDDAAADCLFLRPGLPGVPPFLLHRGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PRTVVAGSSDAAQKAVRAMAVLTDHPYASLTLPDDAAADCLFLRPGLPGVPPFLLHRGGG
              190       200       210       220       230       240

              250       260       270       280     
pF1KE6 DLPNSQEALQKLSDVTLVPVSCSELEKAGAGLSSLCLVLSTRPHS
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DLPNSQEALQKLSDVTLVPVSCSELEKAGAGLSSLCLVLSTRPHS
              250       260       270       280     

>>CCDS705.1 DDAH1 gene_id:23576|Hs108|chr1                (285 aa)
 initn: 915 init1: 778 opt: 899  Z-score: 1051.3  bits: 202.4 E(32554): 3.1e-52
Smith-Waterman score: 899; 52.0% identity (77.1% similar) in 279 aa overlap (1-279:4-278)

                  10        20        30        40        50       
pF1KE6    MGTPGEGLGRCSHALIRGVPESLASGEGAGAGLPALDLAKAQREHGVLGGKLRQRLG
          .: :. ..:: .::..:..::::..    .:    .:.:.:.:.: .  : : ..::
CCDS70 MAGLGHPA-AFGRATHAVVRALPESLGQHALRSAKGEEVDVARAERQHQLYVGVLGSKLG
                10        20        30        40        50         

        60        70        80        90       100       110       
pF1KE6 LQLLELPPEESLPLGPLLGDTAVIQGDTALITRPWSPARRPEVDGVRKALQDLGLRIVEI
       ::..::: .::::   .. :.::.  .::::::: .:.:: ::: ...::. : : :::.
CCDS70 LQVVELPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQLNIVEM
      60        70        80        90       100       110         

       120       130       140       150       160       170       
pF1KE6 GDENATLDGTDVLFTGREFFVGLSKWTNHRGAEIVADTFRDFAVSTVPVSGPSHLRGLCG
        :::::::: ::::::::::::::: ::.:::::.::::.:.:::::::.   ::...:.
CCDS70 KDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCS
     120       130       140       150       160       170         

       180       190       200       210       220       230       
pF1KE6 MGGPRTVVAGSSDAAQKAVRAMAVLTDHPYASLTLPDDAAADCLFLRPGLPGVPPFLLHR
       :.::  .. :::..::::.. :  ..:: : .::.::: ::.:..:  ..:.    ::::
CCDS70 MAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYL--NIPNKGHVLLHR
     180       190       200       210       220         230       

       240       250       260       270       280      
pF1KE6 GGGDLPNSQEALQKLSDVTLVPVSCSELEKAGAGLSSLCLVLSTRPHS 
          . :.: .. .::.:  :.::: :::::.  :: . : ::       
CCDS70 TPEEYPESAKVYEKLKDHMLIPVSMSELEKVD-GLLTCCSVLINKKVDS
       240       250       260        270       280     

>>CCDS81348.1 DDAH1 gene_id:23576|Hs108|chr1              (185 aa)
 initn: 628 init1: 520 opt: 633  Z-score: 744.0  bits: 144.9 E(32554): 4.1e-35
Smith-Waterman score: 633; 56.1% identity (78.3% similar) in 180 aa overlap (100-279:2-178)

      70        80        90       100       110       120         
pF1KE6 PLGPLLGDTAVIQGDTALITRPWSPARRPEVDGVRKALQDLGLRIVEIGDENATLDGTDV
                                     :: ...::. : : :::. :::::::: ::
CCDS81                              MVDMMKEALEKLQLNIVEMKDENATLDGGDV
                                            10        20        30 

     130       140       150       160       170       180         
pF1KE6 LFTGREFFVGLSKWTNHRGAEIVADTFRDFAVSTVPVSGPSHLRGLCGMGGPRTVVAGSS
       ::::::::::::: ::.:::::.::::.:.:::::::.   ::...:.:.::  .. :::
CCDS81 LFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSMAGPNLIAIGSS
              40        50        60        70        80        90 

     190       200       210       220       230       240         
pF1KE6 DAAQKAVRAMAVLTDHPYASLTLPDDAAADCLFLRPGLPGVPPFLLHRGGGDLPNSQEAL
       ..::::.. :  ..:: : .::.::: ::.:..:  ..:.    ::::   . :.: .. 
CCDS81 ESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYL--NIPNKGHVLLHRTPEEYPESAKVY
             100       110       120         130       140         

     250       260       270       280      
pF1KE6 QKLSDVTLVPVSCSELEKAGAGLSSLCLVLSTRPHS 
       .::.:  :.::: :::::.  :: . : ::       
CCDS81 EKLKDHMLIPVSMSELEKVD-GLLTCCSVLINKKVDS
     150       160        170       180     

>>CCDS44170.1 DDAH1 gene_id:23576|Hs108|chr1              (182 aa)
 initn: 613 init1: 505 opt: 623  Z-score: 732.4  bits: 142.8 E(32554): 1.8e-34
Smith-Waterman score: 623; 55.9% identity (78.5% similar) in 177 aa overlap (103-279:2-175)

             80        90       100       110       120       130  
pF1KE6 PLLGDTAVIQGDTALITRPWSPARRPEVDGVRKALQDLGLRIVEIGDENATLDGTDVLFT
                                     ...::. : : :::. :::::::: :::::
CCDS44                              MMKEALEKLQLNIVEMKDENATLDGGDVLFT
                                            10        20        30 

            140       150       160       170       180       190  
pF1KE6 GREFFVGLSKWTNHRGAEIVADTFRDFAVSTVPVSGPSHLRGLCGMGGPRTVVAGSSDAA
       :::::::::: ::.:::::.::::.:.:::::::.   ::...:.:.::  .. :::..:
CCDS44 GREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESA
              40        50        60        70        80        90 

            200       210       220       230       240       250  
pF1KE6 QKAVRAMAVLTDHPYASLTLPDDAAADCLFLRPGLPGVPPFLLHRGGGDLPNSQEALQKL
       :::.. :  ..:: : .::.::: ::.:..:  ..:.    ::::   . :.: .. .::
CCDS44 QKALKIMQQMSDHRYDKLTVPDDIAANCIYL--NIPNKGHVLLHRTPEEYPESAKVYEKL
             100       110       120         130       140         

            260       270       280      
pF1KE6 SDVTLVPVSCSELEKAGAGLSSLCLVLSTRPHS 
       .:  :.::: :::::.  :: . : ::       
CCDS44 KDHMLIPVSMSELEKVD-GLLTCCSVLINKKVDS
     150       160        170       180  




285 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:13:21 2016 done: Tue Nov  8 15:13:21 2016
 Total Scan time:  2.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]