FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6263, 188 aa 1>>>pF1KE6263 188 - 188 aa - 188 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9785+/-0.000318; mu= 14.7828+/- 0.020 mean_var=66.6626+/-13.268, 0's: 0 Z-trim(116.4): 3 B-trim: 0 in 0/53 Lambda= 0.157084 statistics sampled from 27575 (27578) to 27575 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.323), width: 16 Scan time: 4.410 The best scores are: opt bits E(85289) NP_061974 (OMIM: 606907) apolipoprotein M isoform ( 188) 1301 303.2 1.7e-82 NP_001243098 (OMIM: 606907) apolipoprotein M isofo ( 116) 801 189.7 1.5e-48 XP_006715213 (OMIM: 606907) PREDICTED: apolipoprot ( 156) 686 163.7 1.3e-40 >>NP_061974 (OMIM: 606907) apolipoprotein M isoform 1 [H (188 aa) initn: 1301 init1: 1301 opt: 1301 Z-score: 1602.2 bits: 303.2 E(85289): 1.7e-82 Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE6 MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ 130 140 150 160 170 180 pF1KE6 EACELSNN :::::::: NP_061 EACELSNN >>NP_001243098 (OMIM: 606907) apolipoprotein M isoform 2 (116 aa) initn: 801 init1: 801 opt: 801 Z-score: 992.8 bits: 189.7 E(85289): 1.5e-48 Smith-Waterman score: 801; 100.0% identity (100.0% similar) in 116 aa overlap (73-188:1-116) 50 60 70 80 90 100 pF1KE6 HLGQWYFIAGAAPTKEELATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIY :::::::::::::::::::::::::::::: NP_001 MAAGSAPMQLHLRATIRMKDGLCVPRKWIY 10 20 30 110 120 130 140 150 160 pF1KE6 HLTEGSTDLRTEGRPDMKTELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HLTEGSTDLRTEGRPDMKTELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFK 40 50 60 70 80 90 170 180 pF1KE6 SLTSCLDSKAFLLTPRNQEACELSNN :::::::::::::::::::::::::: NP_001 SLTSCLDSKAFLLTPRNQEACELSNN 100 110 >>XP_006715213 (OMIM: 606907) PREDICTED: apolipoprotein (156 aa) initn: 686 init1: 686 opt: 686 Z-score: 850.1 bits: 163.7 E(85289): 1.3e-40 Smith-Waterman score: 686; 100.0% identity (100.0% similar) in 98 aa overlap (91-188:59-156) 70 80 90 100 110 120 pF1KE6 ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK :::::::::::::::::::::::::::::: XP_006 LTLWTTLSSIWLLALPRCSSTFVLPSACEWKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK 30 40 50 60 70 80 130 140 150 160 170 180 pF1KE6 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ 90 100 110 120 130 140 pF1KE6 EACELSNN :::::::: XP_006 EACELSNN 150 188 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:35:44 2016 done: Tue Nov 8 11:35:45 2016 Total Scan time: 4.410 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]