FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6263, 188 aa 1>>>pF1KE6263 188 - 188 aa - 188 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0559+/-0.000658; mu= 14.1134+/- 0.040 mean_var=59.6313+/-11.734, 0's: 0 Z-trim(109.6): 8 B-trim: 0 in 0/53 Lambda= 0.166087 statistics sampled from 10972 (10975) to 10972 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.337), width: 16 Scan time: 1.570 The best scores are: opt bits E(32554) CCDS4710.1 APOM gene_id:55937|Hs108|chr6 ( 188) 1301 319.5 7.5e-88 CCDS59004.1 APOM gene_id:55937|Hs108|chr6 ( 116) 801 199.6 5.8e-52 >>CCDS4710.1 APOM gene_id:55937|Hs108|chr6 (188 aa) initn: 1301 init1: 1301 opt: 1301 Z-score: 1690.7 bits: 319.5 E(32554): 7.5e-88 Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE6 MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MFHQIWAALLYFYGIILNSIYQCPEHSQLTTLGVDGKEFPEVHLGQWYFIAGAAPTKEEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTEGRPDMK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 TELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFKSLTSCLDSKAFLLTPRNQ 130 140 150 160 170 180 pF1KE6 EACELSNN :::::::: CCDS47 EACELSNN >>CCDS59004.1 APOM gene_id:55937|Hs108|chr6 (116 aa) initn: 801 init1: 801 opt: 801 Z-score: 1046.4 bits: 199.6 E(32554): 5.8e-52 Smith-Waterman score: 801; 100.0% identity (100.0% similar) in 116 aa overlap (73-188:1-116) 50 60 70 80 90 100 pF1KE6 HLGQWYFIAGAAPTKEELATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIY :::::::::::::::::::::::::::::: CCDS59 MAAGSAPMQLHLRATIRMKDGLCVPRKWIY 10 20 30 110 120 130 140 150 160 pF1KE6 HLTEGSTDLRTEGRPDMKTELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 HLTEGSTDLRTEGRPDMKTELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVEEFK 40 50 60 70 80 90 170 180 pF1KE6 SLTSCLDSKAFLLTPRNQEACELSNN :::::::::::::::::::::::::: CCDS59 SLTSCLDSKAFLLTPRNQEACELSNN 100 110 188 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:35:44 2016 done: Tue Nov 8 11:35:44 2016 Total Scan time: 1.570 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]