FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6501, 136 aa
  1>>>pF1KE6501 136 - 136 aa - 136 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.5690+/-0.000335; mu= -15.4258+/- 0.021
 mean_var=458.7979+/-95.710, 0's: 0 Z-trim(128.4): 2  B-trim: 1077 in 1/60
 Lambda= 0.059877
 statistics sampled from 59405 (59419) to 59405 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.903), E-opt: 0.2 (0.697), width:  16
 Scan time:  4.010

The best scores are:                                      opt bits E(85289)
NP_054788 (OMIM: 613526) psoriasis susceptibility  ( 136) 1074 104.7 4.7e-23


>>NP_054788 (OMIM: 613526) psoriasis susceptibility 1 ca  (136 aa)
 initn: 1074 init1: 1074 opt: 1074  Z-score: 534.9  bits: 104.7 E(85289): 4.7e-23
Smith-Waterman score: 1074; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE6 MILNWKLLGILVLCLHTRGISGSEGHPSHPPAEDREEAGSPTLPQGPPVPGDPWPGAPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MILNWKLLGILVLCLHTRGISGSEGHPSHPPAEDREEAGSPTLPQGPPVPGDPWPGAPPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FEDPPPTRPSRPWRDLPETGVWLPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 FEDPPPTRPSRPWRDLPETGVWLPEPPRTDPPQPPRPDDPWPAGPQPPENPWPPAPEVDN
               70        80        90       100       110       120

              130      
pF1KE6 RPQEEPDLDPPREEYR
       ::::::::::::::::
NP_054 RPQEEPDLDPPREEYR
              130      




136 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:53:26 2016 done: Tue Nov  8 13:53:27 2016
 Total Scan time:  4.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]