FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9604, 219 aa 1>>>pF1KE9604 219 - 219 aa - 219 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.4400+/-0.000415; mu= -2.9909+/- 0.026 mean_var=262.7478+/-52.695, 0's: 0 Z-trim(120.4): 43 B-trim: 859 in 2/57 Lambda= 0.079123 statistics sampled from 35564 (35612) to 35564 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.418), width: 16 Scan time: 6.550 The best scores are: opt bits E(85289) NP_005312 (OMIM: 142220) histone H1.4 [Homo sapien ( 219) 1337 164.8 1e-40 NP_005311 (OMIM: 142210) histone H1.3 [Homo sapien ( 221) 1142 142.5 5.1e-34 NP_005310 (OMIM: 142710) histone H1.2 [Homo sapien ( 213) 1106 138.4 8.5e-33 NP_005313 (OMIM: 142711) histone H1.5 [Homo sapien ( 226) 1098 137.5 1.7e-32 NP_005316 (OMIM: 142709) histone H1.1 [Homo sapien ( 215) 877 112.3 6.4e-25 NP_005314 (OMIM: 142712) histone H1t [Homo sapiens ( 207) 563 76.4 3.8e-14 NP_005309 (OMIM: 142708) histone H1.0 [Homo sapien ( 194) 390 56.7 3.2e-08 NP_006017 (OMIM: 602785) histone H1x [Homo sapiens ( 213) 331 50.0 3.7e-06 >>NP_005312 (OMIM: 142220) histone H1.4 [Homo sapiens] (219 aa) initn: 1337 init1: 1337 opt: 1337 Z-score: 852.1 bits: 164.8 E(85289): 1e-40 Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219) 10 20 30 40 50 60 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAKAAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAKAAK 130 140 150 160 170 180 190 200 210 pF1KE9 PKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK ::::::::::::::::::::::::::::::::::::::: NP_005 PKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK 190 200 210 >>NP_005311 (OMIM: 142210) histone H1.3 [Homo sapiens] (221 aa) initn: 814 init1: 814 opt: 1142 Z-score: 731.7 bits: 142.5 E(85289): 5.1e-34 Smith-Waterman score: 1142; 86.0% identity (94.1% similar) in 221 aa overlap (1-219:1-221) 10 20 30 40 50 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKS-AGAAKRKASGPPVSELITKAVAASKERSGVSL :::::: ::. :::::::::::::.:. : :.:::::::::::::::::::::::::::: NP_005 MSETAPLAPTIPAPAEKTPVKKKAKKAGATAGKRKASGPPVSELITKAVAASKERSGVSL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 AALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_005 AALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEGKPK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 AKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKK-AKSPKKAKA :::::::: .:::::::::::..:::::::: ::::::.::::.:::.:: ::: ::.:. NP_005 AKKAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPATAAGTKKVAKSAKKVKT 130 140 150 160 170 180 180 190 200 210 pF1KE9 AKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK .:::: :::::::: ::::::::..:::..: :::: ::: NP_005 PQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAAPKKK 190 200 210 220 >>NP_005310 (OMIM: 142710) histone H1.2 [Homo sapiens] (213 aa) initn: 931 init1: 931 opt: 1106 Z-score: 709.7 bits: 138.4 E(85289): 8.5e-33 Smith-Waterman score: 1106; 86.9% identity (93.9% similar) in 214 aa overlap (1-213:1-212) 10 20 30 40 50 60 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA ::::::::::: ::::.:::::: :.::.. :::::::::::::::::::::::::::: NP_005 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. NP_005 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKV 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKK-AKSPKKAKAA ::::..: :::.:::::::::.:.::::::::::::::::::::. .:: ::::::::.: NP_005 KKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVA 130 140 150 160 170 180 180 190 200 210 pF1KE9 KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK ::::: :: :: ::::::::::..::: : ::: NP_005 KPKKAAKSAAK--AVKPKAAKPKVVKPKKAAPKKK 190 200 210 >>NP_005313 (OMIM: 142711) histone H1.5 [Homo sapiens] (226 aa) initn: 1125 init1: 652 opt: 1098 Z-score: 704.5 bits: 137.5 E(85289): 1.7e-32 Smith-Waterman score: 1098; 84.7% identity (91.0% similar) in 222 aa overlap (1-218:1-220) 10 20 30 40 50 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSA---GAAKRKASGPPVSELITKAVAASKERSGV ::::::: :.:::.::.:.:::: :.: :::::::.::::::::::::::::::.:. NP_005 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 PKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAK :::::::::::::::::. :::: :: ::..:::::::::::::. : :::::::: NP_005 PKAKKAGAAKAKKPAGAT--PKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAK 130 140 150 160 170 180 190 200 210 pF1KE9 AA-KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK :: ::::: ::::: :::::::::::.::::::::: : ::: NP_005 AAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK 180 190 200 210 220 >>NP_005316 (OMIM: 142709) histone H1.1 [Homo sapiens] (215 aa) initn: 732 init1: 540 opt: 877 Z-score: 568.4 bits: 112.3 E(85289): 6.4e-25 Smith-Waterman score: 877; 71.2% identity (85.1% similar) in 222 aa overlap (1-219:1-215) 10 20 30 40 50 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAA---KRKASGPPVSELITKAVAASKERSGV ::::.: :::: : :: . :::.: : :: :.: .:: :::::..:...::::.:: NP_005 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK ::::::::::::::::::::::::::.:::::::::::::::::::::::::::.: :.: NP_005 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 PKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAK : :.:. : : .::.:: ::::::. :::.: ::::::::::. :..:.::: : NP_005 PGASKV--ATKTKATGASKKLKKATGAS--KKSVK-TPKKAKKPAATR--KSSKNPKKPK 130 140 150 160 170 180 190 200 210 pF1KE9 AAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK ..::::. ::::::::::::::: ...:::.::::::: ::: NP_005 TVKPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK 180 190 200 210 >>NP_005314 (OMIM: 142712) histone H1t [Homo sapiens] (207 aa) initn: 623 init1: 396 opt: 563 Z-score: 374.9 bits: 76.4 E(85289): 3.8e-14 Smith-Waterman score: 594; 53.4% identity (74.9% similar) in 219 aa overlap (1-213:1-207) 10 20 30 40 50 pF1KE9 MSETAPAAPAAP--APAEKTPVKKKARKSAG--AAKRKASGPPVSELITKAVAASKERSG ::::.::: :. : :: :.::..:: :: .:.::. . ::.:::.:...:.:: : NP_005 MSETVPAASASAGVAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 VSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEA .::.::::::::::::::::::::::.:::::.:: ::::.::::::::::.::. . NP_005 MSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKST 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 KPKAKKAGAAKAKKPAGA--AKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPK . ::::. .::.:: . . .:.:: : :: :.:::: :.. : ..: . NP_005 RSKAKKSVSAKTKKLVLSRDSKSPKTA-----------KTNKRAKKPRATT-PKTVRSGR 130 140 150 160 180 190 200 210 pF1KE9 KAKAAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK :::.:: :. :::.::.: : : .. . .. . : :: NP_005 KAKGAKGKQQQKSPVKARASKSKLTQHHEVNVRKATSKK 170 180 190 200 >>NP_005309 (OMIM: 142708) histone H1.0 [Homo sapiens] (194 aa) initn: 334 init1: 214 opt: 390 Z-score: 268.6 bits: 56.7 E(85289): 3.2e-08 Smith-Waterman score: 405; 42.8% identity (64.0% similar) in 222 aa overlap (1-219:1-194) 10 20 30 40 50 60 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA :.:.. .:::: : : : :.:.... : :..:. :. : :.:.: : NP_005 MTENSTSAPAAK-P-----------KRAKASKKSTDHPKYSDMIVAAIQAEKNRAGSSRQ 10 20 30 40 70 80 90 100 110 pF1KE9 ALKKALAAAGYDVEKN-NSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPK ...: . . : : .: .:.:::..: ::. :.: ::::.::::::.: : : : :: NP_005 SIQKYIKSH-YKVGENADSQIKLSIKRLVTTGVLKQTKGVGASGSFRLAK---SDE--PK 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE9 AKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKK--PAAAAGAKKAKSPKKAK :... :.:: . ::::. :::.:.:.: : : :. : : : .::::: NP_005 -KSVAFKKTKKEIKKVATPKKAS---KPKKAASKAPTKKPKATPVKKAKKKLAATPKKAK 110 120 130 140 150 180 190 200 210 pF1KE9 AAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK ::: . .:.::. ::: ::: .:::: . : :.::: NP_005 --KPKTVKAKPVKAS--KPKKAKP--VKPKAKSSAKRAGKKK 160 170 180 190 >>NP_006017 (OMIM: 602785) histone H1x [Homo sapiens] (213 aa) initn: 282 init1: 164 opt: 331 Z-score: 231.6 bits: 50.0 E(85289): 3.7e-06 Smith-Waterman score: 332; 36.2% identity (64.8% similar) in 210 aa overlap (5-213:18-213) 10 20 30 40 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKA : . : . : .: :: ::. .:.: . :.:.... NP_006 MSVELEEALPVTTAEGMAKKVTKAGGSAALSPSKK--RKN---SKKKNQPGKYSQLVVET 10 20 30 40 50 50 60 70 80 90 100 pF1KE9 VAASKERSGVSLAAL-KKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFK . ::.: ::: . .: . .: ... . .: ..:.::.. ::.:.:::::.:::: NP_006 IRRLGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFK 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE9 LNKKAASGEAKPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAG ::.: : .. .... : : :: .:.: :::. .:. .. : : : ...:: . NP_006 LNRKKLEGGGE---RRGAPAAATAPAPTAHKAKKAAPGAAGSRRADKKPARGQKPEQRSH 120 130 140 150 160 170 170 180 190 200 210 pF1KE9 AKKAKSPKKAKAAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK ::. . :: :..: ::. . : .: :: :::::.. ::. : .: NP_006 -KKGAGAKKDKGGKAKKT--AAAGGKKVK-KAAKPSV--PKVPKGRK 180 190 200 210 219 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:28:48 2016 done: Sun Nov 6 06:28:49 2016 Total Scan time: 6.550 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]