FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9604, 219 aa 1>>>pF1KE9604 219 - 219 aa - 219 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.2227+/-0.00102; mu= -1.3833+/- 0.062 mean_var=247.2016+/-49.481, 0's: 0 Z-trim(112.7): 32 B-trim: 200 in 1/54 Lambda= 0.081573 statistics sampled from 13413 (13438) to 13413 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.413), width: 16 Scan time: 2.230 The best scores are: opt bits E(32554) CCDS4586.1 HIST1H1E gene_id:3008|Hs108|chr6 ( 219) 1337 169.3 1.7e-42 CCDS4597.1 HIST1H1D gene_id:3007|Hs108|chr6 ( 221) 1142 146.4 1.4e-35 CCDS4577.1 HIST1H1C gene_id:3006|Hs108|chr6 ( 213) 1106 142.1 2.5e-34 CCDS4635.1 HIST1H1B gene_id:3009|Hs108|chr6 ( 226) 1098 141.2 5e-34 CCDS4569.1 HIST1H1A gene_id:3024|Hs108|chr6 ( 215) 877 115.2 3.3e-26 CCDS34349.1 HIST1H1T gene_id:3010|Hs108|chr6 ( 207) 563 78.2 4.2e-15 >>CCDS4586.1 HIST1H1E gene_id:3008|Hs108|chr6 (219 aa) initn: 1337 init1: 1337 opt: 1337 Z-score: 876.5 bits: 169.3 E(32554): 1.7e-42 Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219) 10 20 30 40 50 60 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAKAAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAKAAK 130 140 150 160 170 180 190 200 210 pF1KE9 PKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK ::::::::::::::::::::::::::::::::::::::: CCDS45 PKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK 190 200 210 >>CCDS4597.1 HIST1H1D gene_id:3007|Hs108|chr6 (221 aa) initn: 814 init1: 814 opt: 1142 Z-score: 752.5 bits: 146.4 E(32554): 1.4e-35 Smith-Waterman score: 1142; 86.0% identity (94.1% similar) in 221 aa overlap (1-219:1-221) 10 20 30 40 50 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKS-AGAAKRKASGPPVSELITKAVAASKERSGVSL :::::: ::. :::::::::::::.:. : :.:::::::::::::::::::::::::::: CCDS45 MSETAPLAPTIPAPAEKTPVKKKAKKAGATAGKRKASGPPVSELITKAVAASKERSGVSL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 AALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: CCDS45 AALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEGKPK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 AKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKK-AKSPKKAKA :::::::: .:::::::::::..:::::::: ::::::.::::.:::.:: ::: ::.:. CCDS45 AKKAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPATAAGTKKVAKSAKKVKT 130 140 150 160 170 180 180 190 200 210 pF1KE9 AKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK .:::: :::::::: ::::::::..:::..: :::: ::: CCDS45 PQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAAPKKK 190 200 210 220 >>CCDS4577.1 HIST1H1C gene_id:3006|Hs108|chr6 (213 aa) initn: 931 init1: 931 opt: 1106 Z-score: 729.8 bits: 142.1 E(32554): 2.5e-34 Smith-Waterman score: 1106; 86.9% identity (93.9% similar) in 214 aa overlap (1-213:1-212) 10 20 30 40 50 60 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA ::::::::::: ::::.:::::: :.::.. :::::::::::::::::::::::::::: CCDS45 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. CCDS45 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKV 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKK-AKSPKKAKAA ::::..: :::.:::::::::.:.::::::::::::::::::::. .:: ::::::::.: CCDS45 KKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVA 130 140 150 160 170 180 180 190 200 210 pF1KE9 KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK ::::: :: :: ::::::::::..::: : ::: CCDS45 KPKKAAKSAAK--AVKPKAAKPKVVKPKKAAPKKK 190 200 210 >>CCDS4635.1 HIST1H1B gene_id:3009|Hs108|chr6 (226 aa) initn: 1125 init1: 652 opt: 1098 Z-score: 724.3 bits: 141.2 E(32554): 5e-34 Smith-Waterman score: 1098; 84.7% identity (91.0% similar) in 222 aa overlap (1-218:1-220) 10 20 30 40 50 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSA---GAAKRKASGPPVSELITKAVAASKERSGV ::::::: :.:::.::.:.:::: :.: :::::::.::::::::::::::::::.:. CCDS46 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 PKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAK :::::::::::::::::. :::: :: ::..:::::::::::::. : :::::::: CCDS46 PKAKKAGAAKAKKPAGAT--PKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAK 130 140 150 160 170 180 190 200 210 pF1KE9 AA-KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK :: ::::: ::::: :::::::::::.::::::::: : ::: CCDS46 AAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK 180 190 200 210 220 >>CCDS4569.1 HIST1H1A gene_id:3024|Hs108|chr6 (215 aa) initn: 732 init1: 540 opt: 877 Z-score: 584.1 bits: 115.2 E(32554): 3.3e-26 Smith-Waterman score: 877; 71.2% identity (85.1% similar) in 222 aa overlap (1-219:1-215) 10 20 30 40 50 pF1KE9 MSETAPAAPAAPAPAEKTPVKKKARKSAGAA---KRKASGPPVSELITKAVAASKERSGV ::::.: :::: : :: . :::.: : :: :.: .:: :::::..:...::::.:: CCDS45 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK ::::::::::::::::::::::::::.:::::::::::::::::::::::::::.: :.: CCDS45 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 PKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAK : :.:. : : .::.:: ::::::. :::.: ::::::::::. :..:.::: : CCDS45 PGASKV--ATKTKATGASKKLKKATGAS--KKSVK-TPKKAKKPAATR--KSSKNPKKPK 130 140 150 160 170 180 190 200 210 pF1KE9 AAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK ..::::. ::::::::::::::: ...:::.::::::: ::: CCDS45 TVKPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK 180 190 200 210 >>CCDS34349.1 HIST1H1T gene_id:3010|Hs108|chr6 (207 aa) initn: 623 init1: 396 opt: 563 Z-score: 384.6 bits: 78.2 E(32554): 4.2e-15 Smith-Waterman score: 594; 53.4% identity (74.9% similar) in 219 aa overlap (1-213:1-207) 10 20 30 40 50 pF1KE9 MSETAPAAPAAP--APAEKTPVKKKARKSAG--AAKRKASGPPVSELITKAVAASKERSG ::::.::: :. : :: :.::..:: :: .:.::. . ::.:::.:...:.:: : CCDS34 MSETVPAASASAGVAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 VSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEA .::.::::::::::::::::::::::.:::::.:: ::::.::::::::::.::. . CCDS34 MSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKST 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 KPKAKKAGAAKAKKPAGA--AKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPK . ::::. .::.:: . . .:.:: : :: :.:::: :.. : ..: . CCDS34 RSKAKKSVSAKTKKLVLSRDSKSPKTA-----------KTNKRAKKPRATT-PKTVRSGR 130 140 150 160 180 190 200 210 pF1KE9 KAKAAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK :::.:: :. :::.::.: : : .. . .. . : :: CCDS34 KAKGAKGKQQQKSPVKARASKSKLTQHHEVNVRKATSKK 170 180 190 200 219 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:28:47 2016 done: Sun Nov 6 06:28:47 2016 Total Scan time: 2.230 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]