Result of FASTA (ccds) for
pFN21AE1218
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1218, 213 aa
1>>>pF1KE1218 213 - 213 aa - 213 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2692+/-0.000887; mu= 2.6516+/- 0.054
mean_var=186.6356+/-36.475, 0's: 0 Z-trim(113.2): 27 B-trim: 7 in 2/52
Lambda= 0.093881
statistics sampled from 13800 (13817) to 13800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.424), width: 16
Scan time: 2.410
The best scores are: opt bits E(32554)
CCDS4577.1 HIST1H1C gene_id:3006|Hs108|chr6 ( 213) 1308 188.3 3e-48
CCDS4586.1 HIST1H1E gene_id:3008|Hs108|chr6 ( 219) 1106 161.0 5.3e-40
CCDS4597.1 HIST1H1D gene_id:3007|Hs108|chr6 ( 221) 1053 153.8 7.7e-38
CCDS4635.1 HIST1H1B gene_id:3009|Hs108|chr6 ( 226) 978 143.7 8.9e-35
CCDS4569.1 HIST1H1A gene_id:3024|Hs108|chr6 ( 215) 799 119.4 1.7e-27
CCDS34349.1 HIST1H1T gene_id:3010|Hs108|chr6 ( 207) 524 82.1 2.7e-16
>>CCDS4577.1 HIST1H1C gene_id:3006|Hs108|chr6 (213 aa)
initn: 1308 init1: 1308 opt: 1308 Z-score: 979.7 bits: 188.3 E(32554): 3e-48
Smith-Waterman score: 1308; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)
10 20 30 40 50 60
pF1KE1 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 KKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVA
130 140 150 160 170 180
190 200 210
pF1KE1 KPKKAAKSAAKAVKPKAAKPKVVKPKKAAPKKK
:::::::::::::::::::::::::::::::::
CCDS45 KPKKAAKSAAKAVKPKAAKPKVVKPKKAAPKKK
190 200 210
>>CCDS4586.1 HIST1H1E gene_id:3008|Hs108|chr6 (219 aa)
initn: 931 init1: 931 opt: 1106 Z-score: 831.7 bits: 161.0 E(32554): 5.3e-40
Smith-Waterman score: 1106; 86.9% identity (93.9% similar) in 214 aa overlap (1-212:1-213)
10 20 30 40 50 60
pF1KE1 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLA
::::::::::: ::::.:::::: :.::.. ::::::::::::::::::::::::::::
CCDS45 MSETAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS45 ALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 KKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVA
::::..: :::.:::::::::.:.::::::::::::::::::::. .:: ::::::::.:
CCDS45 KKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKK-AKSPKKAKAA
130 140 150 160 170
190 200 210
pF1KE1 KPKKAAKSAAKA--VKPKAAKPKVVKPKKAAPKKK
::::: :: ::: :::::::::..::: : :::
CCDS45 KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
180 190 200 210
>>CCDS4597.1 HIST1H1D gene_id:3007|Hs108|chr6 (221 aa)
initn: 1231 init1: 882 opt: 1053 Z-score: 792.8 bits: 153.8 E(32554): 7.7e-38
Smith-Waterman score: 1053; 81.1% identity (90.5% similar) in 222 aa overlap (1-213:1-221)
10 20 30 40 50
pF1KE1 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTP--RKASGPPVSELITKAVAASKERSGVS
:::::: ::. ::::.:::::: ::::.: ::::::::::::::::::::::::::
CCDS45 MSETAPLAPTIPAPAEKTPVKKKA-KKAGATAGKRKASGPPVSELITKAVAASKERSGVS
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 LAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS45 LAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEGKP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 KVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAK
:.::::..::.::.::::::::.::.:::::: ::::::.::::.:. ::::::: ::.:
CCDS45 KAKKAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPATAAGTKKVAKSAKKVK
120 130 140 150 160 170
180 190 200 210
pF1KE1 VAKPKKAAKSAAKA-------VKPKAAKPKVVKPKKAAPKKK
. .::::::: ::: .:::..::::.: ::::::::
CCDS45 TPQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAAPKKK
180 190 200 210 220
>>CCDS4635.1 HIST1H1B gene_id:3009|Hs108|chr6 (226 aa)
initn: 737 init1: 737 opt: 978 Z-score: 737.8 bits: 143.7 E(32554): 8.9e-35
Smith-Waterman score: 978; 79.4% identity (89.9% similar) in 218 aa overlap (1-211:1-214)
10 20 30 40 50
pF1KE1 MSETAPAAPAAAPPAEKAPVKKKAAKKAGGT---PRKASGPPVSELITKAVAASKERSGV
::::::: :. :.::.:.::::.:::.:. :::.::::::::::::::::::.:.
CCDS46 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 PKVKKAGGTKPKKPVGAA-KKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKK
::.::::..: :::.::. :: :::::. ::..::::::::::::: : :::::::::
CCDS46 PKAKKAGAAKAKKPAGATPKKAKKAAGA---KKAVKKTPKKAKKPAAAGV-KKVAKSPKK
130 140 150 160 170
180 190 200 210
pF1KE1 AKVA-KPKKAAKSAAK--AVKPKAAKPKVVKPKKAAPKKK
::.: :::::.:: :: ::::::::::..::: : ::
CCDS46 AKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
180 190 200 210 220
>>CCDS4569.1 HIST1H1A gene_id:3024|Hs108|chr6 (215 aa)
initn: 585 init1: 511 opt: 799 Z-score: 607.1 bits: 119.4 E(32554): 1.7e-27
Smith-Waterman score: 799; 67.7% identity (83.4% similar) in 223 aa overlap (1-213:1-215)
10 20 30 40 50
pF1KE1 MSETAPAAPAAAPPAEKAPVKKKA---AKKAGGTPRKASGPPVSELITKAVAASKERSGV
::::.: ::::. :: . ::: :: :... .: .:: :::::..:...::::.::
CCDS45 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
::::::::::::::::::::::::::.:::::::::::::::::::::::::::.: :.:
CCDS45 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 PKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKA
: ..:.. :: : .::.:: :::.:.. :::.: :::::::::: :.: .:.:::
CCDS45 PGASKVA-TKTKA-TGASKKLKKATGAS--KKSVK-TPKKAKKPAA---TRKSSKNPKKP
130 140 150 160 170
180 190 200 210
pF1KE1 KVAKPKKAAKSAAKA--VKPKAAK-----PKVVKPKKAAPKKK
:..::::.::: ::: ::::::: ::..::::::::::
CCDS45 KTVKPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK
180 190 200 210
>>CCDS34349.1 HIST1H1T gene_id:3010|Hs108|chr6 (207 aa)
initn: 531 init1: 379 opt: 524 Z-score: 406.0 bits: 82.1 E(32554): 2.7e-16
Smith-Waterman score: 553; 52.7% identity (73.2% similar) in 220 aa overlap (1-212:1-207)
10 20 30 40 50
pF1KE1 MSETAPAAPAAAPPA--EKAPVKKKAAKKAG--GTPRKASGPPVSELITKAVAASKERSG
::::.::: :.: : :: :.::.. : :: .. ::. . ::.:::.:...:.:: :
CCDS34 MSETVPAASASAGVAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVSQERVG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 VSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEA
.::.::::::::::::::::::::::.:::::.:: ::::.::::::::::.::. .
CCDS34 MSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKST
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 KPKVKKAGGTKPKKPVGA--AKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSP
. :.::. ..: :: : . .:.:: : :: :.:::: :.: :...:
CCDS34 RSKAKKSVSAKTKKLVLSRDSKSPKTA-----------KTNKRAKKPRATT--PKTVRSG
130 140 150 160
180 190 200 210
pF1KE1 KKAKVAKPKKAAKSA--AKAVKPKAAKPKVVKPKKAAPKKK
.::: :: :. :: :.: : : .. . :. .::. ::
CCDS34 RKAKGAKGKQQQKSPVKARASKSKLTQHHEVNVRKATSKK
170 180 190 200
213 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 11 16:59:36 2016 done: Fri Nov 11 16:59:36 2016
Total Scan time: 2.410 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]