FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1710, 215 aa 1>>>pF1KE1710 215 - 215 aa - 215 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.4061+/-0.000361; mu= 1.6647+/- 0.023 mean_var=224.3298+/-44.516, 0's: 0 Z-trim(120.5): 30 B-trim: 0 in 0/58 Lambda= 0.085631 statistics sampled from 35848 (35879) to 35848 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.421), width: 16 Scan time: 6.810 The best scores are: opt bits E(85289) NP_005316 (OMIM: 142709) histone H1.1 [Homo sapien ( 215) 1303 172.8 3.9e-43 NP_005312 (OMIM: 142220) histone H1.4 [Homo sapien ( 219) 877 120.1 2.7e-27 NP_005311 (OMIM: 142210) histone H1.3 [Homo sapien ( 221) 827 114.0 2e-25 NP_005313 (OMIM: 142711) histone H1.5 [Homo sapien ( 226) 823 113.5 2.8e-25 NP_005310 (OMIM: 142710) histone H1.2 [Homo sapien ( 213) 799 110.5 2.1e-24 NP_005314 (OMIM: 142712) histone H1t [Homo sapiens ( 207) 558 80.7 1.9e-15 NP_005309 (OMIM: 142708) histone H1.0 [Homo sapien ( 194) 372 57.7 1.5e-08 NP_006017 (OMIM: 602785) histone H1x [Homo sapiens ( 213) 322 51.6 1.2e-06 >>NP_005316 (OMIM: 142709) histone H1.1 [Homo sapiens] (215 aa) initn: 1303 init1: 1303 opt: 1303 Z-score: 895.5 bits: 172.8 E(85289): 3.9e-43 Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215) 10 20 30 40 50 60 pF1KE1 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PGASKVATKTKATGASKKLKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 PGASKVATKTKATGASKKLKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKV 130 140 150 160 170 180 190 200 210 pF1KE1 AKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK ::::::::::::::::::::::::::::::::::: NP_005 AKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK 190 200 210 >>NP_005312 (OMIM: 142220) histone H1.4 [Homo sapiens] (219 aa) initn: 732 init1: 540 opt: 877 Z-score: 610.9 bits: 120.1 E(85289): 2.7e-27 Smith-Waterman score: 877; 70.7% identity (86.0% similar) in 222 aa overlap (1-215:1-219) 10 20 30 40 50 60 pF1KE1 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV ::::.: :::: : :: . :::.: .:.:.:.: .:: :::::..:...::::.:: NP_005 MSETAPAAPAAPAPAEKTPVKKKARK---SAGAAKRKASGPPVSELITKAVAASKERSGV 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK ::::::::::::::::::::::::::.:::::::::::::::::::::::::::.: :.: NP_005 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 PGASKV--ATKTKATGASKKLKKATGAS--KKSVK-TPKKAKKPAATR--KSSKNPKKPK : :.:. : : .::.:: ::::::. :::.: ::::::::::. :..:.::: : NP_005 PKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAK 120 130 140 150 160 170 180 190 200 210 pF1KE1 TVKPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK ..::::. ::::::::::::::: ...:::.::::::: ::: NP_005 AAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK 180 190 200 210 >>NP_005311 (OMIM: 142210) histone H1.3 [Homo sapiens] (221 aa) initn: 501 init1: 501 opt: 827 Z-score: 577.5 bits: 114.0 E(85289): 2e-25 Smith-Waterman score: 827; 67.7% identity (83.0% similar) in 223 aa overlap (1-215:1-221) 10 20 30 40 50 60 pF1KE1 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV ::::.: ::. : :: . ::::: .:.:.:.: .:: :::::..:...::::.:: NP_005 MSETAPLAPTIPAPAEKTPVKKKAKKA--GATAGKRKASGPPVSELITKAVAASKERSGV 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK ::::::::::::::::::::::::::.:::::::::::::::::::::::::::.: : : NP_005 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEGK 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 PGASKV--ATKTKATGASKKLKKATGAS--KKSVK-TPKKAKKPAA---TRKSSKNPKKP : :.:. : : .::.:: ::..::. :::.: ::::.::::. :.: .:. :: NP_005 PKAKKAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPATAAGTKKVAKSAKKV 120 130 140 150 160 170 180 190 200 210 pF1KE1 KTVKPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK :: .:::.::::::::: :::::: . :::..: :::::::: NP_005 KTPQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAAPKKK 180 190 200 210 220 >>NP_005313 (OMIM: 142711) histone H1.5 [Homo sapiens] (226 aa) initn: 735 init1: 554 opt: 823 Z-score: 574.7 bits: 113.5 E(85289): 2.8e-25 Smith-Waterman score: 823; 66.8% identity (83.2% similar) in 220 aa overlap (1-214:1-220) 10 20 30 40 50 60 pF1KE1 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV ::::.: :. : :: : ::: : : .:.:.:.: .:: :::::..:...::::.:. NP_005 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK :::::::::::.::::::::::::::.:::::::::::::::::::::::::::.: :.: NP_005 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 PGASKV--ATKTKATGAS-KKLKKATGASKKSVKTPKKAKKPAAT--RKSSKNPKKPKTV : :.:. : : .::. :: :::.::.: :::::::::::. .: .:.::: :.. NP_005 PKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAA 130 140 150 160 170 180 180 190 200 210 pF1KE1 -KPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK ::::..::::: ::::::::: ...:::.:::: : :: NP_005 AKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK 190 200 210 220 >>NP_005310 (OMIM: 142710) histone H1.2 [Homo sapiens] (213 aa) initn: 585 init1: 511 opt: 799 Z-score: 559.0 bits: 110.5 E(85289): 2.1e-24 Smith-Waterman score: 799; 67.7% identity (83.4% similar) in 223 aa overlap (1-215:1-213) 10 20 30 40 50 60 pF1KE1 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV ::::.: ::::. :: . ::: :: :... .: .:: :::::..:...::::.:: NP_005 MSETAPAAPAAAPPAEKAPVKKKA---AKKAGGTPRKASGPPVSELITKAVAASKERSGV 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK ::::::::::::::::::::::::::.:::::::::::::::::::::::::::.: :.: NP_005 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 PGASKVA-TKTKA-TGASKKLKKATGAS--KKSVK-TPKKAKKPAA---TRKSSKNPKKP : ..:.. :: : .::.:: :::.:.. :::.: :::::::::: :.: .:.::: NP_005 PKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKA 120 130 140 150 160 170 180 190 200 210 pF1KE1 KTVKPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK :..::::.::: :: :::::::: ::..:::::::::: NP_005 KVAKPKKAAKSAAK--AVKPKAAK-----PKVVKPKKAAPKKK 180 190 200 210 >>NP_005314 (OMIM: 142712) histone H1t [Homo sapiens] (207 aa) initn: 529 init1: 355 opt: 558 Z-score: 398.3 bits: 80.7 E(85289): 1.9e-15 Smith-Waterman score: 558; 53.1% identity (73.2% similar) in 213 aa overlap (1-209:1-207) 10 20 30 40 50 pF1KE1 MSETVPPAPAAS--AAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERG :::::: : :.. :: :: . :...::: .::.: : . :::.::..: : :.:: NP_005 MSETVPAASASAGVAAMEKLPTKKRGRKPAGLISASRKVP-NLSVSKLITEALSVSQERV 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 GVSLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVE :.::.::::::::::::::::::::::..::::.:: ::::.::::::::::.::. NP_005 GMSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TKPGASK-VATKTKATGASKKLKKATGASKKSVKTPKKAKKPAATR-KSSKNPKKPKTVK :. :.: :..::: :. : : :..:: :.:::: :: :. .. .: : .: NP_005 TRSKAKKSVSAKTKKLVLSRDSK-----SPKTAKTNKRAKKPRATTPKTVRSGRKAKGAK 120 130 140 150 160 170 180 190 200 210 pF1KE1 PKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK :. :::.::.: : : .. . .. . : :: NP_005 GKQQQKSPVKARASKSKLTQHHEVNVRKATSKK 180 190 200 >>NP_005309 (OMIM: 142708) histone H1.0 [Homo sapiens] (194 aa) initn: 268 init1: 268 opt: 372 Z-score: 274.4 bits: 57.7 E(85289): 1.5e-08 Smith-Waterman score: 372; 47.1% identity (66.5% similar) in 191 aa overlap (24-203:10-194) 10 20 30 40 50 60 pF1KE1 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV : :: : : ::::. :. :..:: : .. :.:.: NP_005 MTENSTSAPAAKP-KRAKASKKSTDHPKYSDMIVAAIQAEKNRAGS 10 20 30 40 70 80 90 100 110 pF1KE1 SLAALKKALAAAGYDVEKN-NSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKK---ASS : ...: . . : : .: .:.:::.:: ::. :.: ::::.::::::.: :. .: NP_005 SRQSIQKYIKSH-YKVGENADSQIKLSIKRLVTTGVLKQTKGVGASGSFRLAKSDEPKKS 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 V---ETKPGASKVATKTKATGASKKLKKATGASKKSVKTP-KKAKKPAATRKSSKNPKKP : .:: .:::: ::. .: .:: .:: :: ::::: :. . :. ::: NP_005 VAFKKTKKEIKKVATPKKASKPKKAASKAP--TKKPKATPVKKAKKKLAA--TPKKAKKP 110 120 130 140 150 160 180 190 200 210 pF1KE1 KTVKPKKV-AKSPAKAKAVKPKAAKA--RVTKPKTAKPKKAAPKKK :::: : : :..: ::: ::::: .. :. : : NP_005 KTVKAKPVKASKPKKAKPVKPKAKSSAKRAGKKK 170 180 190 >>NP_006017 (OMIM: 602785) histone H1x [Homo sapiens] (213 aa) initn: 231 init1: 180 opt: 322 Z-score: 240.5 bits: 51.6 E(85289): 1.2e-06 Smith-Waterman score: 322; 38.1% identity (61.4% similar) in 215 aa overlap (1-209:5-213) 10 20 30 40 50 pF1KE1 MSETVPPAPAASAAPEKPLAGKKAK-KPAKAAAASKKKPAGPSVSELIVQAASSSK . :..: . : . : . :: .: .:.: :::: . :.:.:.. NP_006 MSVELEEALPVTTAEGMAKKVTKAGGSAALSPSKKRKNSKKKNQPGKYSQLVVETIRRLG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 ERGGVSLAAL-KKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLN-KK ::.: ::: . .: . .: ... . .: .::.::.. ::.:.:::::.:::::: :: NP_006 ERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRKK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 ASSVETKPGASKVATKTKATGASKKLKKATGA--SKKSVKTPKKAKKPAA-TRKSSKNPK . . :: .:: . : : : : : :: :... : : ...:: ..:.. . : NP_006 LEGGGERRGAPAAAT-APAPTAHKAKKAAPGAAGSRRADKKPARGQKPEQRSHKKGAGAK 130 140 150 160 170 180 190 200 210 pF1KE1 KPKTVKPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK : : : ::.: : .: :: :::: : ::. : .: NP_006 KDKGGKAKKTAA--AGGKKVK-KAAKPSV--PKVPKGRK 180 190 200 210 215 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:57:58 2016 done: Sun Nov 6 16:57:59 2016 Total Scan time: 6.810 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]