FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3245, 568 aa 1>>>pF1KE3245 568 - 568 aa - 568 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5084+/-0.00116; mu= 9.4504+/- 0.070 mean_var=140.8043+/-27.744, 0's: 0 Z-trim(106.8): 26 B-trim: 380 in 1/50 Lambda= 0.108085 statistics sampled from 9202 (9210) to 9202 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.283), width: 16 Scan time: 3.470 The best scores are: opt bits E(32554) CCDS4500.1 RIOK1 gene_id:83732|Hs108|chr6 ( 568) 3743 595.7 4.9e-170 CCDS11877.1 RIOK3 gene_id:8780|Hs108|chr18 ( 519) 720 124.3 3.7e-28 >>CCDS4500.1 RIOK1 gene_id:83732|Hs108|chr6 (568 aa) initn: 3743 init1: 3743 opt: 3743 Z-score: 3166.1 bits: 595.7 E(32554): 4.9e-170 Smith-Waterman score: 3743; 100.0% identity (100.0% similar) in 568 aa overlap (1-568:1-568) 10 20 30 40 50 60 pF1KE3 MDYRRLLMSRVVPGQFDDADSSDSENRDLKTVKEKDDILFEDLQDNVNENGEGEIEDEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MDYRRLLMSRVVPGQFDDADSSDSENRDLKTVKEKDDILFEDLQDNVNENGEGEIEDEEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EGYDDDDDDWDWDEGVGKLAKGYVWNGGSNPQANRQTSDSSSAKMSTPADKVLRKFENKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 EGYDDDDDDWDWDEGVGKLAKGYVWNGGSNPQANRQTSDSSSAKMSTPADKVLRKFENKI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 NLDKLNVTDSVINKVTEKSRQKEADMYRIKDKADRATVEQVLDPRTRMILFKMLTRGIIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 NLDKLNVTDSVINKVTEKSRQKEADMYRIKDKADRATVEQVLDPRTRMILFKMLTRGIIT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EINGCISTGKEANVYHASTANGESRAIKIYKTSILVFKDRDKYVSGEFRFRHGYCKGNPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 EINGCISTGKEANVYHASTANGESRAIKIYKTSILVFKDRDKYVSGEFRFRHGYCKGNPR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 KMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDDMPAPLLKNVQLSESKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDDMPAPLLKNVQLSESKA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 RELYLQVIQYMRRMYQDARLVHADLSEFNMLYHGGGVYIIDVSQSVEHDHPHALEFLRKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RELYLQVIQYMRRMYQDARLVHADLSEFNMLYHGGGVYIIDVSQSVEHDHPHALEFLRKD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 CANVNDFFMRHSVAVMTVRELFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 CANVNDFFMRHSVAVMTVRELFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 DEEVFKRAYIPRTLNEVKNYERDMDIIMKLKEEDMAMNAQQDNILYQTVTGLKKDLSGVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 DEEVFKRAYIPRTLNEVKNYERDMDIIMKLKEEDMAMNAQQDNILYQTVTGLKKDLSGVQ 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 KVPALLENQVEERTCSDSEDIGSSECSDTDSEEQGDHARPKKHTTDPDIDKKERKKMVKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KVPALLENQVEERTCSDSEDIGSSECSDTDSEEQGDHARPKKHTTDPDIDKKERKKMVKE 490 500 510 520 530 540 550 560 pF1KE3 AQREKRKNKIPKHVKKRKEKTAKTKKGK :::::::::::::::::::::::::::: CCDS45 AQREKRKNKIPKHVKKRKEKTAKTKKGK 550 560 >>CCDS11877.1 RIOK3 gene_id:8780|Hs108|chr18 (519 aa) initn: 872 init1: 673 opt: 720 Z-score: 619.1 bits: 124.3 E(32554): 3.7e-28 Smith-Waterman score: 929; 35.6% identity (69.4% similar) in 438 aa overlap (6-428:78-504) 10 20 30 pF1KE3 MDYRRLLMSRVVPGQFDDADSSDSENRDLKTVKE- :...... ..: ... . .. : . CCDS11 QLEEEAAVFPEVAVAEGPFITGENIDTSSDLMLAQMLQMEYDREYDAQLRREEKKFNGDS 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE3 KDDILFEDLQDNVNENGEGEIEDEEEEGYDDDDDDWDWDEGVGKLAKGYVWNGGSNPQAN : .: ::. . .:. ... ..: . : :: . . : ::.. .: . . CCDS11 KVSISFENYR-KVHPYEDSDSSEDEVDWQDTRDDPYRPAKPVPTPKKGFIGKGKDITTKH 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE3 RQT--SDSSSAKMSTPADKVLRKFENKINLDKLNVTDSVINKVTEKSRQKEADMYRIKDK .. . ...:.: . : . . . :..: :.... :.: . ... ..: :...: CCDS11 DEVVCGRKNTARMENFAPEF--QVGDGIGMD-LKLSNHVFNALKQHAYSEERRSARLHEK 170 180 190 200 210 220 160 170 180 190 200 pF1KE3 ADRATVEQVLDPRTRMILFKMLTRGIITEINGCISTGKEANVYHASTANGESR------- ...:.:...::.::....::.. :.. :.::::::::. :.:: .. :.. CCDS11 KEHSTAEKAVDPKTRLLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVI 230 240 250 260 270 280 210 220 230 240 250 260 pF1KE3 ----AIKIYKTSILVFKDRDKYVSGEFRFRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAE :::..::.. ::.::::.. .:::. . : ::::... ::::::.:: :.. : CCDS11 PTECAIKVFKTTLNEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAG 290 300 310 320 330 340 270 280 290 300 310 320 pF1KE3 IPCPEPIMLRSHVLVMSFIGKDDMPAPLLKNVQLSESKARELYLQVIQYMRRMYQDARLV :::: ..:..:.:::::::.:..::: ::.:.:. . .: : :... ::..:.. :: CCDS11 IPCPTVVLLKKHILVMSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLV 350 360 370 380 390 400 330 340 350 360 370 380 pF1KE3 HADLSEFNMLYHGGGVYIIDVSQSVEHDHPHALEFLRKDCANVNDFFMRHSVA-VMTVRE ::::::.:::.:.: :..:::::::: :::.:::: .:: ::..::.. .: ... :: CCDS11 HADLSEYNMLWHAGKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERE 410 420 430 440 450 460 390 400 410 420 430 440 pF1KE3 LFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHVDEEVFKRAYIPRTLNEVKNY ::. :. .:: .: .:.. . :. ..:::... : : CCDS11 LFNAVSGLNITADNEADFLAEIEAL-------EKMNEDHVQKNGRKAASFLKDDGDPPLL 470 480 490 500 510 450 460 470 480 490 500 pF1KE3 ERDMDIIMKLKEEDMAMNAQQDNILYQTVTGLKKDLSGVQKVPALLENQVEERTCSDSED CCDS11 YDE 568 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:00:23 2016 done: Sun Nov 6 17:00:24 2016 Total Scan time: 3.470 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]