Result of FASTA (ccds) for
pFN21AB9605
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9605, 403 aa
1>>>pF1KB9605 403 - 403 aa - 403 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.2828+/-0.00089; mu= -1.9695+/- 0.054
mean_var=333.3748+/-66.923, 0's: 0 Z-trim(117.4): 66 B-trim: 0 in 0/53
Lambda= 0.070244
statistics sampled from 18116 (18181) to 18116 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.558), width: 16
Scan time: 3.870
The best scores are: opt bits E(32554)
CCDS4471.1 FOXQ1 gene_id:94234|Hs108|chr6 ( 403) 2768 293.4 2.4e-79
CCDS30708.1 FOXD2 gene_id:2306|Hs108|chr1 ( 495) 589 72.7 8.5e-13
CCDS4472.1 FOXF2 gene_id:2295|Hs108|chr6 ( 444) 556 69.3 7.9e-12
CCDS75259.1 FOXD1 gene_id:2297|Hs108|chr5 ( 465) 555 69.2 8.8e-12
CCDS550.1 FOXE3 gene_id:2301|Hs108|chr1 ( 319) 550 68.6 9.5e-12
>>CCDS4471.1 FOXQ1 gene_id:94234|Hs108|chr6 (403 aa)
initn: 2768 init1: 2768 opt: 2768 Z-score: 1537.8 bits: 293.4 E(32554): 2.4e-79
Smith-Waterman score: 2768; 99.3% identity (99.5% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KB9 MKLEVFVPRAAHGDKQGSDLEGAGGSDAPSPLSAAGDDSLGSDGDCTANSPAAGGGARDP
::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS44 MKLEVFVPRAAHGDKQGSDLEGAGGSDAPSPLSAAGDDSLGSDGDCAANSPAAGGGARDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PGDGEQSAGGGPGAEEAIPAAAAAAVVAEGAEAGAAGPGAGGAGSGEGARSKPYTRRPKP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QGDGEQSAGGGPGAEEAIPAAAAAAVVAEGAEAGAAGPGAGGAGSGEGARSKPYTRRPKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PYSYIALIAMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PYSYIALIAMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRKRLSHRAPVPAPGLRPEEAPGLPAAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRKRLSHRAPVPAPGLRPEEAPGLPAAPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PAPAAPASPRMRSPARQEERASPAGKFSSSFAIDSILRKPFRSRRLRDTAPGTTLQWGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PAPAAPASPRMRSPARQEERASPAGKFSSSFAIDSILRKPFRSRRLRDTAPGTTLQWGAA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 PCPPLPAFPALLPAAPCRALLPLCAYGAGEPARLGAREAEVPPTAPPLLLAPLPAAAPAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PCPPLPAFPALLPAAPCRALLPLCAYGAGEPARLGAREAEVPPTAPPLLLAPLPAAAPAK
310 320 330 340 350 360
370 380 390 400
pF1KB9 PLRGPAAGGAHLYCPLRLPAALQAASVRRPGPHLPYPVETLLA
:::::::::::::::::::::::::::::::::::::::::::
CCDS44 PLRGPAAGGAHLYCPLRLPAALQAASVRRPGPHLPYPVETLLA
370 380 390 400
>>CCDS30708.1 FOXD2 gene_id:2306|Hs108|chr1 (495 aa)
initn: 415 init1: 365 opt: 589 Z-score: 343.3 bits: 72.7 E(32554): 8.5e-13
Smith-Waterman score: 629; 38.0% identity (56.6% similar) in 376 aa overlap (18-384:25-358)
10 20 30 40 50
pF1KB9 MKLEVFVPRAAHGDKQGSDLEGAGGSDAPSPLSAAGDDSLGSDGDCTANSPAA
.:.. .::... . : : . : .. : :
CCDS30 MTLGSCCCEIMSSESSPAALSEADADIDVVGGGSGGGELPARSGPRAPRDVLPHGHEPPA
10 20 30 40 50 60
60 70 80 90 100
pF1KB9 GGGARDPPGDGEQSAGGGPGAEEAIP---AAAAAAVVAEGAEA--GAAGPGAGGAGSGEG
. : : :.:.: . : .:. :::::. . :: : :::::: : ..: .
CCDS30 EEAEADLAEDEEESGGCSDGEPRALASRGAAAAAGSPGPGAAAARGAAGPGPGPPSGGAA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 ARSKPYTRRPKPPYSYIALIAMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVR
.:: : . ::::::::::.::: .: ::::.:: :.. :.::..: .. .:.::.:
CCDS30 TRS-PLV---KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIR
130 140 150 160 170
170 180 190 200 210 220
pF1KB9 HNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRKRLSHRAPVPAPGLR
:::::::::::. :.:. : :: ::: :.:.: : .: : :::::.. : :.: : .
CCDS30 HNLSLNDCFVKIPREPGNP-GKGNYWTLDPESADMFDNGSFLRRRKRFK-RQPLPPPHPH
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB9 PEEAPGLPAAPPPAPAAPASPRMRSPARQEERASPAGKFSSSFAIDSILRKPFRSRRLRD
:. : : . :: ..: :. : : .. ..:. . :
CCDS30 PHPHPELLLR--GGAAAAGDPGAFLPGFA---AYGAYGYGYGLALPAYGAPP--------
240 250 260 270 280
290 300 310 320 330 340
pF1KB9 TAPGTTLQWGAAPCP-PLP---AFPALLPAAPCRALLPLCAYGAGEPARLGAREAEVPPT
:: :: : : : :: : ::::. .: :.: : .::
CCDS30 --PGP------APHPHPHPHAFAFAAAAAAAPCQLSVP--------PGR-----AAAPPP
290 300 310 320
350 360 370 380 390 400
pF1KB9 APPLLLAPLPAAAPAKPLRGPAAGGAHLYCPLRLPAALQAASVRRPGPHLPYPVETLLA
.:: : . :.: . : .::.:.. : ::: : :
CCDS30 GPP--TASVFAGAGSAPAPAPASGSGPGPGPAGLPAFLGAELGCAKAFYAASLSPPAAGT
330 340 350 360 370
CCDS30 AAGLPTALLRQGLKTDAGGGAGGGGAGAGQRPSFSIDHIMGHGGGGAAPPGAGEGSPGPP
380 390 400 410 420 430
>>CCDS4472.1 FOXF2 gene_id:2295|Hs108|chr6 (444 aa)
initn: 507 init1: 389 opt: 556 Z-score: 325.8 bits: 69.3 E(32554): 7.9e-12
Smith-Waterman score: 565; 33.7% identity (56.4% similar) in 383 aa overlap (25-386:5-364)
10 20 30 40 50 60
pF1KB9 MKLEVFVPRAAHGDKQGSDLEGAGGSDAPSPLSAAGDDSLGSDGDCTANSPAAGGGARDP
:. :.:: : . :. . : :...:
CCDS44 MTTEGGPPPAPLRRACSPVPGALQAALMSPPPAAAAAAAA
10 20 30 40
70 80 90 100 110
pF1KB9 PGDGEQSAGGGPGAEEAIPAAAAAAVVAEGAEAGAAGPGAGGAGSGEGARSKPYTRRP-K
. .:.... .: : .... .. : .: .:: :..::::: . ... ::: :
CCDS44 APETTSSSSSSSSASCASSSSSSNSASAPSAACKSAGGGGAGAGSGGAKKASSGLRRPEK
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB9 PPYSYIALIAMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVK
:::::::::.:::..: . ::::.:: ..:...::::::.: ::.::::::::::.::.:
CCDS44 PPYSYIALIVMAIQSSPSKRLTLSEIYQFLQARFPFFRGAYQGWKNSVRHNLSLNECFIK
110 120 130 140 150 160
180 190 200 210 220
pF1KB9 VLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRR----RKR------LSHRAPVPAPGLRP
. . .:: :: .:: ..: ::. : .: :::: :.. . ::. : . :.
CCDS44 LPKGLGRP-GKGHYWTIDPASEFMFEEGSFRRRPRGFRRKCQALKPMYHRV-VSGLGFGA
170 180 190 200 210
230 240 250 260 270 280
pF1KB9 EEAP-GLP-AAPPPAPAAPASPRMRSPARQEERASPAGKFSSSFAIDSILRKPFRSRRLR
: :. ::: :: . : . . . :: . : : .: . .. .
CCDS44 SLLPQGFDFQAPPSAPLGCHSQGGYGGLDMMPAGYDAGAGAPSHA------HPHHHHHHH
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB9 ----DTAPGTTLQWGAAPCPPLPAFPALLPAAPCRALLPLCAYGAGEPARLGAREAEVP-
. ::.: . : :: .:: :. . :: :.: . : . :
CCDS44 VPHMSPNPGSTYM---ASCP-VPAGPGGVGAA-----------GGGGGGDYGPDSSSSPV
280 290 300 310
350 360 370 380 390
pF1KB9 PTAPPLLLA---PLPAAAPAKPLRGPAAGGAHLYCPLRLPAALQAASVRRPGPHLPYPVE
:..: . : : ..:: .:.:. : :.. :::
CCDS44 PSSPAMASAIECHSPYTSPAAHWSSPGASPYLKQPPALTPSSNPAASAGLHSSMSSYSLE
320 330 340 350 360 370
400
pF1KB9 TLLA
CCDS44 QSYLHQNAREDLSVGLPRYQHHSTPVCDRKDFVLNFNGISSFHPSASGSYYHHHHQSVCQ
380 390 400 410 420 430
>>CCDS75259.1 FOXD1 gene_id:2297|Hs108|chr5 (465 aa)
initn: 409 init1: 364 opt: 555 Z-score: 325.0 bits: 69.2 E(32554): 8.8e-12
Smith-Waterman score: 569; 35.7% identity (53.1% similar) in 409 aa overlap (14-398:32-397)
10 20 30
pF1KB9 MKLEVFVPRAAHGDKQGSDLEGAGGSDAPSPL-------SAAG
... .: :.:: : : ::
CCDS75 TLSTEMSDASGLAEETDIDVVGEGEDEEDEEEEDDDEGGGGGPRLAVPAQRRRRRRSYAG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 DDSLGS-----DGDCTANSPAAGGGARDPPGDGEQSAGGGPGAEEAIPAAAAAAVVAEGA
.: : . : : .: :::. ::: :: ::.: ::
CCDS75 EDELEDLEEEEDDDDILLAPPAGGSPA-PPG----------------PAPAAGA----GA
70 80 90 100
100 110 120 130 140 150
pF1KB9 EAGAAGPGAGGAGS-GEGARSKPYTRRPKPPYSYIALIAMAIRDSAGGRLTLAEINEYLM
.:..: ::::.:: : ::.. : . ::::::::::.::: .: ::::.:: :..
CCDS75 GGGGGGGGAGGGGSAGSGAKN-PLV---KPPYSYIALITMAILQSPKKRLTLSEICEFIS
110 120 130 140 150
160 170 180 190 200 210
pF1KB9 GKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGVFR
:.::..: .. .:.::.::::::::::::. :.:. : :: ::: :.:.: : .: :
CCDS75 GRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNP-GKGNYWTLDPESADMFDNGSFL
160 170 180 190 200 210
220 230 240 250 260
pF1KB9 RRRKRLSHRAPVPAPG--------LRPEEAPGLPAAPPPAPAAPASPRMRSPARQEERAS
:::::.. : :. :. :: : : .: :: :: : : .:
CCDS75 RRRKRFK-RQPLLPPNAAAAESLLLRGAGAAG--GAGDPAAAAALFPPAPPPP---PHAY
220 230 240 250 260
270 280 290 300 310 320
pF1KB9 PAGKFSSSFAIDSILRKPFRS--RRLRDTAPGTTLQWGAAPCPPLPAFPALLPAAPCRAL
: .. ..... : . .: ..... . : :: : : : .
CCDS75 GYGPYGCGYGLQLPPYAPPSALFAAAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGY
270 280 290 300 310 320
330 340 350 360 370
pF1KB9 LPLCAYGAGEPARLGAREAEVP-PTAPPLLLAPLPAAAPAKPLRGPAAGGAHLYCPLRLP
: ::. :. : : :.. : : : .:. . ::::..:
CCDS75 RPH-PLGAALPGPLPASAAKAGGPGASALARSPFSIESIIGGSLGPAAAAA---------
330 340 350 360 370
380 390 400
pF1KB9 AALQAASVRRPGPHLPYPVETLLA
:: :::.. . .: : ::
CCDS75 AAAQAAAAAQASPS-PSPVAAPPAPGSSGGGCAAQAAVGPAAALTRSLVAAAAAAASSVS
380 390 400 410 420 430
>>CCDS550.1 FOXE3 gene_id:2301|Hs108|chr1 (319 aa)
initn: 345 init1: 318 opt: 550 Z-score: 324.4 bits: 68.6 E(32554): 9.5e-12
Smith-Waterman score: 573; 38.7% identity (55.0% similar) in 349 aa overlap (53-391:2-310)
30 40 50 60 70 80
pF1KB9 AGGSDAPSPLSAAGDDSLGSDGDCTANSPAAGGGARDPPGDGEQSAGGGPGAEEAIPAAA
:: . :::. . .: :. . :..
CCDS55 MAGRSDMDPPA----AFSGFPALPAVAPSGP
10 20
90 100 110 120 130
pF1KB9 AAAVVAEGAEAG------AAGPG--AGGAGSGEGARSKPYTRRPKPPYSYIALIAMAIRD
. .: ::: : ::: : : . : : : . .: :::::::::::::.
CCDS55 PPSPLA-GAEPGREPEEAAAGRGEAAPTPAPGPGRRRRRPLQRGKPPYSYIALIAMALAH
30 40 50 60 70 80
140 150 160 170 180 190
pF1KB9 SAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYW
. : ::::: : ... .: :.: : :.::.::::.:::::::: :.:. : :: :::
CCDS55 APGRRLTLAAIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCFVKVPREPGNP-GKGNYW
90 100 110 120 130 140
200 210 220 230 240 250
pF1KB9 MLNPNSEYTFADGVFRRRRKRLSHRAPVPAPGLRPEEAPGLPAAPPPAPAAPA-SPRMRS
:.: . : .: : :::::.. :: .:: . ::: : : :: ::: .: .
CCDS55 TLDPAAADMFDNGSFLRRRKRFK-RAELPA---HAAAAPGPPLPFPYAPYAPAPGPALLV
150 160 170 180 190 200
260 270 280 290 300 310
pF1KB9 PARQE-ERASPAGKFSSSFAIDSILRKPFRSRRLRDTAPGTTLQWGAAPCPPLPAFPALL
: . :: ... :..::.. :. : .:: :: : :
CCDS55 PPPSAGPGPSPPARL---FSVDSLV-------NLQPELAGL-----GAPEPPCCAAPDAA
210 220 230 240
320 330 340 350 360 370
pF1KB9 PAAPCRALLPLCAYGAGEPARLGAREAEVPPTAPPLLLAPLPAAAPAKPLRGPAAGGAHL
:: .: :: .:. : . . : :.. : .:::: : : ::::. .
CCDS55 AAA-----FPPCAAAASPPLYSQVPDRLVLPATRPGP-GPLPAE-PLLALAGPAAALG--
250 260 270 280 290
380 390 400
pF1KB9 YCPLRLPAALQAASVRRPGPHLPYPVETLLA
:: :. : .:.::
CCDS55 --PLS-PGE---AYLRQPGFASGLERYL
300 310
403 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 02:07:23 2016 done: Tue Nov 8 02:07:24 2016
Total Scan time: 3.870 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]