FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6689, 278 aa 1>>>pF1KE6689 278 - 278 aa - 278 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2307+/-0.000784; mu= 15.2600+/- 0.047 mean_var=62.7454+/-12.575, 0's: 0 Z-trim(107.5): 15 B-trim: 244 in 2/48 Lambda= 0.161914 statistics sampled from 9616 (9621) to 9616 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.296), width: 16 Scan time: 1.810 The best scores are: opt bits E(32554) CCDS4470.1 HUS1B gene_id:135458|Hs108|chr6 ( 278) 1811 431.4 3.4e-121 CCDS34635.1 HUS1 gene_id:3364|Hs108|chr7 ( 280) 927 224.9 4.9e-59 >>CCDS4470.1 HUS1B gene_id:135458|Hs108|chr6 (278 aa) initn: 1811 init1: 1811 opt: 1811 Z-score: 2289.3 bits: 431.4 E(32554): 3.4e-121 Smith-Waterman score: 1811; 99.6% identity (99.6% similar) in 278 aa overlap (1-278:1-278) 10 20 30 40 50 60 pF1KE6 MKFRAKITGKGCLELFIHVSGTVARLAKVCVLRVRPDSLCFGPAGSGGLHEARLWCEVRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MKFRAKITGKGCLELFIHVSGTVARLAKVCVLRVRPDSLCFGPAGSGGLHEARLWCEVRQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GAFQQFRMEGVSEDLDEIHLELTAEHLSRAARSAAGASSLKLQLTHKRRPSLTVAVELVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 GAFQQFRMEGVSEDLDEIHLELTAEHLSRAARSAAGASSLKLQLTHKRRPSLTVAVELVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SLGRARSVVHDLPVRVLPRRVWRDCLPPSLRASDASIRLPRWRTLRSIVERMANVGSHVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 SLGRARSVVHDLPVRVLPRRVWRDCLPPSLRASDASIRLPRWRTLRSIVERMANVGSHVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 VEANLSGRMTLSIETEVVSIQSYFKNLGNPPQSAVGVPENRDLESMVQVRVDNRKLLQFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VEANLSGRMTLSIETEVVSIQSYFKNLGNPPQSAVGVPENRDLESMVQVRVDNRKLLQFL 190 200 210 220 230 240 250 260 270 pF1KE6 EGQQIHPTTALCNIWDNTLLQLVLVQEYVSLQYFIPAL ::::::::::::::::::::::::::: :::::::::: CCDS44 EGQQIHPTTALCNIWDNTLLQLVLVQEDVSLQYFIPAL 250 260 270 >>CCDS34635.1 HUS1 gene_id:3364|Hs108|chr7 (280 aa) initn: 760 init1: 760 opt: 927 Z-score: 1173.3 bits: 224.9 E(32554): 4.9e-59 Smith-Waterman score: 927; 48.9% identity (80.9% similar) in 282 aa overlap (1-278:1-279) 10 20 30 40 50 pF1KE6 MKFRAKITGKGCLELFIHVSGTVARLAKVCVLRVRPDSLCF---GPAGSGGLHEARLWCE :::::::. .::. : ..:. .:.:::.:.::. ::.: : ..::. .::: CCDS34 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVS---MWCE 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 VRQ-GAFQQFRMEGVSEDLDEIHLELTAEHLSRAARSAAGASSLKLQLTHKRRPSLTVAV ..: . :..:.::::: . .::.::::.:.:::: ..: .: .::..::.:. : :::.: CCDS34 LEQENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSV 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 ELVSSLGRARSVVHDLPVRVLPRRVWRDCLPPSLRASDASIRLPRWRTLRSIVERMANVG ::.: . .: :.::.:..:.::..:.: : . :.:: :: .:..:.::.: :.. CCDS34 ELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTMKSVVEKMKNIS 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 SHVLVEANLSGRMTLSIETEVVSIQSYFKNLGNPPQSAVGVPENRDLESMVQVRVDNRKL .:...::::.:...:.::::.: . ..::.::::: .. .. :.:..: :..:..: ::: CCDS34 NHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHIDIRKL 180 190 200 210 220 230 240 250 260 270 pF1KE6 LQFLEGQQIHPTTALCNIWDNTLLQLVLVQEYVSLQYFIPAL :::: :::..:: ::::: .: .... :..: :::::::::: CCDS34 LQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPALS 240 250 260 270 280 278 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:25:51 2016 done: Tue Nov 8 15:25:51 2016 Total Scan time: 1.810 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]