FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1603, 104 aa 1>>>pF1KE1603 104 - 104 aa - 104 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8981+/-0.00028; mu= 12.3126+/- 0.017 mean_var=62.7691+/-12.681, 0's: 0 Z-trim(118.5): 7 B-trim: 16 in 1/48 Lambda= 0.161883 statistics sampled from 31576 (31583) to 31576 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.37), width: 16 Scan time: 4.860 The best scores are: opt bits E(85289) NP_443095 (OMIM: 606500) secretoglobin family 3A m ( 104) 642 157.4 3.8e-39 NP_473364 (OMIM: 600807,606531) secretoglobin fami ( 93) 195 53.0 9.2e-08 >>NP_443095 (OMIM: 606500) secretoglobin family 3A membe (104 aa) initn: 642 init1: 642 opt: 642 Z-score: 823.8 bits: 157.4 E(85289): 3.8e-39 Smith-Waterman score: 642; 100.0% identity (100.0% similar) in 104 aa overlap (1-104:1-104) 10 20 30 40 50 60 pF1KE1 MKLAALLGLCVALSCSSAAAFLVGSAKPVAQPVAALESAAEAGAGTLANPLGTLNPLKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_443 MKLAALLGLCVALSCSSAAAFLVGSAKPVAQPVAALESAAEAGAGTLANPLGTLNPLKLL 10 20 30 40 50 60 70 80 90 100 pF1KE1 LSSLGIPVNHLIEGSQKCVAELGPQAVGAVKALKALLGALTVFG :::::::::::::::::::::::::::::::::::::::::::: NP_443 LSSLGIPVNHLIEGSQKCVAELGPQAVGAVKALKALLGALTVFG 70 80 90 100 >>NP_473364 (OMIM: 600807,606531) secretoglobin family 3 (93 aa) initn: 231 init1: 165 opt: 195 Z-score: 260.3 bits: 53.0 E(85289): 9.2e-08 Smith-Waterman score: 208; 45.5% identity (63.4% similar) in 101 aa overlap (1-100:1-92) 10 20 30 40 50 pF1KE1 MKLAALLGLCVALSCS-SAAAFLVGSAKPVAQPVAALESAAEAGAGTLANPLGTLNPLKL :::.... : . :: ::.:::... : :: : : : : ..:::: NP_473 MKLVTIFLLVTISLCSYSATAFLINK---VPLPVDKLAPLP------LDNILPFMDPLKL 10 20 30 40 50 60 70 80 90 100 pF1KE1 LLSSLGIPVNHLIEGSQKCVAELGPQAVGAVKALKALLGALTVFG ::..::: :.::.:: .::: ::::.: ::: : :. : NP_473 LLKTLGISVEHLVEGLRKCVNELGPEASEAVKKLLEALSHLV 60 70 80 90 104 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:01:31 2016 done: Sun Nov 6 17:01:32 2016 Total Scan time: 4.860 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]