FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5168, 153 aa 1>>>pF1KE5168 153 - 153 aa - 153 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9381+/-0.000294; mu= 14.1630+/- 0.018 mean_var=60.0748+/-11.748, 0's: 0 Z-trim(117.4): 41 B-trim: 0 in 0/54 Lambda= 0.165473 statistics sampled from 29429 (29461) to 29429 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.345), width: 16 Scan time: 5.080 The best scores are: opt bits E(85289) NP_060308 (OMIM: 224230,606470,613987) H/ACA ribon ( 153) 1028 253.0 1.4e-67 NP_001030005 (OMIM: 224230,606470,613987) H/ACA ri ( 90) 506 128.2 3e-30 NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo ( 128) 312 82.0 3.4e-16 NP_001003796 (OMIM: 601304) NHP2-like protein 1 [H ( 128) 312 82.0 3.4e-16 NP_000963 (OMIM: 185640) 60S ribosomal protein L7a ( 266) 145 42.3 0.00063 >>NP_060308 (OMIM: 224230,606470,613987) H/ACA ribonucle (153 aa) initn: 1028 init1: 1028 opt: 1028 Z-score: 1334.3 bits: 253.0 E(85289): 1.4e-67 Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153) 10 20 30 40 50 60 pF1KE5 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS 70 80 90 100 110 120 130 140 150 pF1KE5 KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL ::::::::::::::::::::::::::::::::: NP_060 KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL 130 140 150 >>NP_001030005 (OMIM: 224230,606470,613987) H/ACA ribonu (90 aa) initn: 523 init1: 506 opt: 506 Z-score: 664.2 bits: 128.2 E(85289): 3e-30 Smith-Waterman score: 506; 97.5% identity (97.5% similar) in 80 aa overlap (1-80:1-80) 10 20 30 40 50 60 pF1KE5 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS ::::::::::::::::: : NP_001 RRGVKEVQKFVNKGEKGTWVQPQAPSAPPV 70 80 90 >>NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo sap (128 aa) initn: 297 init1: 297 opt: 312 Z-score: 411.6 bits: 82.0 E(85289): 3.4e-16 Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (32-149:7-126) 10 20 30 40 50 60 pF1KE5 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR :: : :::. .::.:: .... . ::.: NP_004 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR 10 20 30 70 80 90 100 110 120 pF1KE5 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK .:..:. : .:.: . ..:.:.:. :.:. :::..:::.:.:::.. :: :: : : . NP_004 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS 40 50 60 70 80 90 130 140 150 pF1KE5 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL ::. : . .: . .. . . .. : NP_004 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 100 110 120 >>NP_001003796 (OMIM: 601304) NHP2-like protein 1 [Homo (128 aa) initn: 297 init1: 297 opt: 312 Z-score: 411.6 bits: 82.0 E(85289): 3.4e-16 Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (32-149:7-126) 10 20 30 40 50 60 pF1KE5 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR :: : :::. .::.:: .... . ::.: NP_001 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR 10 20 30 70 80 90 100 110 120 pF1KE5 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK .:..:. : .:.: . ..:.:.:. :.:. :::..:::.:.:::.. :: :: : : . NP_001 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS 40 50 60 70 80 90 130 140 150 pF1KE5 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL ::. : . .: . .. . . .. : NP_001 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 100 110 120 >>NP_000963 (OMIM: 185640) 60S ribosomal protein L7a [Ho (266 aa) initn: 143 init1: 126 opt: 145 Z-score: 191.5 bits: 42.3 E(85289): 0.00063 Smith-Waterman score: 145; 29.1% identity (57.3% similar) in 117 aa overlap (36-148:108-224) 10 20 30 40 50 60 pF1KE5 ADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKA-VKQKQ---IR : .: :.: : :. : :. .: NP_000 PAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLR 80 90 100 110 120 130 70 80 90 100 110 120 pF1KE5 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK ::. : .:.. . ..:.: :. :::. ::..:. ..:: : .:. :: . : NP_000 AGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRK 140 150 160 170 180 190 130 140 150 pF1KE5 RPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL : : ... . : . : . .: ... NP_000 TCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAK 200 210 220 230 240 250 153 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:14:20 2016 done: Mon Nov 7 22:14:20 2016 Total Scan time: 5.080 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]