FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5168, 153 aa 1>>>pF1KE5168 153 - 153 aa - 153 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8495+/-0.000644; mu= 14.6051+/- 0.039 mean_var=59.0489+/-11.589, 0's: 0 Z-trim(110.6): 16 B-trim: 246 in 1/50 Lambda= 0.166905 statistics sampled from 11727 (11740) to 11727 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.361), width: 16 Scan time: 1.850 The best scores are: opt bits E(32554) CCDS4432.1 NHP2 gene_id:55651|Hs108|chr5 ( 153) 1028 255.0 1.4e-68 CCDS34308.1 NHP2 gene_id:55651|Hs108|chr5 ( 90) 506 129.1 6e-31 CCDS33653.1 SNU13 gene_id:4809|Hs108|chr22 ( 128) 312 82.5 9.3e-17 CCDS14022.1 SNU13 gene_id:4809|Hs108|chr22 ( 128) 312 82.5 9.3e-17 >>CCDS4432.1 NHP2 gene_id:55651|Hs108|chr5 (153 aa) initn: 1028 init1: 1028 opt: 1028 Z-score: 1345.0 bits: 255.0 E(32554): 1.4e-68 Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153) 10 20 30 40 50 60 pF1KE5 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS 70 80 90 100 110 120 130 140 150 pF1KE5 KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL ::::::::::::::::::::::::::::::::: CCDS44 KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL 130 140 150 >>CCDS34308.1 NHP2 gene_id:55651|Hs108|chr5 (90 aa) initn: 523 init1: 506 opt: 506 Z-score: 669.0 bits: 129.1 E(32554): 6e-31 Smith-Waterman score: 506; 97.5% identity (97.5% similar) in 80 aa overlap (1-80:1-80) 10 20 30 40 50 60 pF1KE5 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS ::::::::::::::::: : CCDS34 RRGVKEVQKFVNKGEKGTWVQPQAPSAPPV 70 80 90 >>CCDS33653.1 SNU13 gene_id:4809|Hs108|chr22 (128 aa) initn: 297 init1: 297 opt: 312 Z-score: 414.3 bits: 82.5 E(32554): 9.3e-17 Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (32-149:7-126) 10 20 30 40 50 60 pF1KE5 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR :: : :::. .::.:: .... . ::.: CCDS33 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR 10 20 30 70 80 90 100 110 120 pF1KE5 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK .:..:. : .:.: . ..:.:.:. :.:. :::..:::.:.:::.. :: :: : : . CCDS33 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS 40 50 60 70 80 90 130 140 150 pF1KE5 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL ::. : . .: . .. . . .. : CCDS33 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 100 110 120 >>CCDS14022.1 SNU13 gene_id:4809|Hs108|chr22 (128 aa) initn: 297 init1: 297 opt: 312 Z-score: 414.3 bits: 82.5 E(32554): 9.3e-17 Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (32-149:7-126) 10 20 30 40 50 60 pF1KE5 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR :: : :::. .::.:: .... . ::.: CCDS14 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR 10 20 30 70 80 90 100 110 120 pF1KE5 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK .:..:. : .:.: . ..:.:.:. :.:. :::..:::.:.:::.. :: :: : : . CCDS14 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS 40 50 60 70 80 90 130 140 150 pF1KE5 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL ::. : . .: . .. . . .. : CCDS14 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 100 110 120 153 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:14:19 2016 done: Mon Nov 7 22:14:19 2016 Total Scan time: 1.850 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]