FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2451, 378 aa 1>>>pF1KE2451 378 - 378 aa - 378 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8532+/-0.000977; mu= 4.5273+/- 0.059 mean_var=126.6896+/-25.024, 0's: 0 Z-trim(108.7): 54 B-trim: 30 in 2/49 Lambda= 0.113947 statistics sampled from 10324 (10360) to 10324 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.318), width: 16 Scan time: 2.990 The best scores are: opt bits E(32554) CCDS4332.1 TIMD4 gene_id:91937|Hs108|chr5 ( 378) 2485 419.7 2.1e-117 CCDS54943.1 TIMD4 gene_id:91937|Hs108|chr5 ( 350) 1660 284.1 1.3e-76 CCDS43392.1 HAVCR1 gene_id:26762|Hs108|chr5 ( 364) 449 85.0 1.2e-16 CCDS78076.1 HAVCR1 gene_id:26762|Hs108|chr5 ( 401) 449 85.0 1.3e-16 CCDS4333.1 HAVCR2 gene_id:84868|Hs108|chr5 ( 301) 333 65.9 5.3e-11 >>CCDS4332.1 TIMD4 gene_id:91937|Hs108|chr5 (378 aa) initn: 2485 init1: 2485 opt: 2485 Z-score: 2221.3 bits: 419.7 E(32554): 2.1e-117 Smith-Waterman score: 2485; 99.7% identity (100.0% similar) in 378 aa overlap (1-378:1-378) 10 20 30 40 50 60 pF1KE2 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. CCDS43 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 ESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVSSPQPGASDTAVPEQNKTTKTGQMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 ESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVSSPQPGASDTAVPEQNKTTKTGQMD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN 310 320 330 340 350 360 370 pF1KE2 VLNDVQHGREDEDGLFTL :::::::::::::::::: CCDS43 VLNDVQHGREDEDGLFTL 370 >>CCDS54943.1 TIMD4 gene_id:91937|Hs108|chr5 (350 aa) initn: 1727 init1: 1660 opt: 1660 Z-score: 1488.8 bits: 284.1 E(32554): 1.3e-76 Smith-Waterman score: 2223; 92.3% identity (92.6% similar) in 378 aa overlap (1-378:1-350) 10 20 30 40 50 60 pF1KE2 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 YSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 NDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. CCDS54 TPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSSV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 ESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVSSPQPGASDTAVPEQNKTTKTGQMD ::::::::::::: ::::::::::::::::::: CCDS54 ESTSADTVLLTSK----------------------------ASDTAVPEQNKTTKTGQMD 250 260 270 310 320 330 340 350 360 pF1KE2 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 GIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYIGDSKN 280 290 300 310 320 330 370 pF1KE2 VLNDVQHGREDEDGLFTL :::::::::::::::::: CCDS54 VLNDVQHGREDEDGLFTL 340 350 >>CCDS43392.1 HAVCR1 gene_id:26762|Hs108|chr5 (364 aa) initn: 357 init1: 357 opt: 449 Z-score: 412.7 bits: 85.0 E(32554): 1.2e-16 Smith-Waterman score: 449; 37.5% identity (60.5% similar) in 256 aa overlap (33-281:29-272) 10 20 30 40 50 60 pF1KE2 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS : ::::: ::. .::::.. .: CCDS43 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND :..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: ::::: CCDS43 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND 60 70 80 90 100 110 130 140 150 160 170 pF1KE2 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL .::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... : CCDS43 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP-- 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE2 TTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSW :: : : :... :.. : :. .: .: . : : : . : .. :: : CCDS43 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPS-SP 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE2 SSAESTSADTVLLTSKESKVWDLPSTSHVSMWKT--SDSVSSPQPGASDTAVPEQNKTTK . ::. :. .. . :..: . . : .:.:. . : CCDS43 QPAETHP------TTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHS 240 250 260 270 280 300 310 320 330 340 350 pF1KE2 TGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYI CCDS43 LLTANTTKGIYAGVCISVLVLLALLGVIIAKKYFFKKEVQQLSVSFSSLQIKALQNAVEK 290 300 310 320 330 340 >>CCDS78076.1 HAVCR1 gene_id:26762|Hs108|chr5 (401 aa) initn: 357 init1: 357 opt: 449 Z-score: 412.0 bits: 85.0 E(32554): 1.3e-16 Smith-Waterman score: 449; 37.5% identity (60.5% similar) in 256 aa overlap (33-281:29-272) 10 20 30 40 50 60 pF1KE2 KEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSHNSNSMCWGKDQCPYS : ::::: ::. .::::.. .: CCDS78 MHPQVVILSLILHLADSVAGSVKVGGEAGPSVTLPCHYSG---AVTSMCWNRGSCSLF 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 GCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGWFND :..... :.: .:: ::...:.: : . : :::::: : . :::::::::.: ::::: CCDS78 TCQNGIVWTNGTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVEHRGWFND 60 70 80 90 100 110 130 140 150 160 170 pF1KE2 VKINVRLNLQRASTTTHRTATT----TTRRTTTTSPTTTR-QMTTTPAALPTTVVTTPDL .::.: :.. ..:: .:: :: ::.:: :::: :::.:.. :... : CCDS78 MKITVSLEIVPPKVTTTPIVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTMSIP-- 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE2 TTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSW :: : : :... :.. : :. .: .: . : : : . : .. :: : CCDS78 TTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNHEPVATSPS-SP 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE2 SSAESTSADTVLLTSKESKVWDLPSTSHVSMWKT--SDSVSSPQPGASDTAVPEQNKTTK . ::. :. .. . :..: . . : .:.:. . : CCDS78 QPAETHP------TTLQGAIRREPTSSPLYSYTTDGNDTVTESSDGLWNNNQTQLFLEHS 240 250 260 270 280 300 310 320 330 340 350 pF1KE2 TGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAFLLRGKLMETYCSQKHTRLDYI CCDS78 LLTANTTKGIYAGVCISVLVLLALLGVIIAKMFHLAAFKLKLCKMQLKRKSKQKTISTLR 290 300 310 320 330 340 >>CCDS4333.1 HAVCR2 gene_id:84868|Hs108|chr5 (301 aa) initn: 276 init1: 199 opt: 333 Z-score: 310.9 bits: 65.9 E(32554): 5.3e-11 Smith-Waterman score: 333; 35.6% identity (60.3% similar) in 174 aa overlap (17-189:15-180) 10 20 30 40 50 pF1KE2 MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSSWSH-NSNSMCWGKDQC : : .::. .:. . :::.:. . : .:::: : CCDS43 MFSHLPFDCVLLLLLLLLTRSSEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGAC 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 PYSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNPSESDSGVYCCRIEVPGW : : ....::: : .. ...: :.: . .::::::: : . .:::.:::::..:: CCDS43 PVFECGNVVLRTD-ERDVNYWTSRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGI 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 FNDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQMTTTPAALPTTVVTTPDLTT .:: :.:..: .. :..: : : : :.. : :: : . . ::.. CCDS43 MNDEKFNLKLVIKPAKVTP---APTRQRDFTAAFPRMLTTRGHGPAETQT-LGSLPDINL 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE2 GTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPSKEGPILTAESETVLPSDSWSS :..:.: CCDS43 ---TQISTLANELRDSRLANDLRDSGATIRIGIYIGAGICAGLALALIFGALIFKWYSHS 180 190 200 210 220 230 378 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 12:24:29 2016 done: Thu Nov 3 12:24:29 2016 Total Scan time: 2.990 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]