(Circular) (Six-base) MAPSORT of: pFN21AE5732.seq Check: 873 from: 1 to: 6613 pFN21AE5732 6613 bp With 182 enzymes: SgfI * December 8, 2014 13:42 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2564 2564 Size: 6613 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 4423 278 Size: 53 83 186 936 2887 2468 Fragments arranged by size: 2887 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2085 3114 3956 1937 Size: 148 1029 842 4594 Fragments arranged by size: 4594 1029 842 148 Acc65I G'GTAC_C Cuts at: 3934 3934 Size: 6613 AclI AA'CG_TT Cuts at: 1563 4740 5113 1563 Size: 3177 373 3063 Fragments arranged by size: 3177 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2867 3481 4676 6060 6328 1632 Size: 1235 614 1195 1384 268 1917 Fragments arranged by size: 1917 1384 1235 1195 614 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6416 AflIII A'CryG_T Cuts at: 1203 2943 3045 5512 6489 1203 Size: 1740 102 2467 977 1327 Fragments arranged by size: 2467 1740 1327 977 102 AgeI A'CCGG_T Cuts at: 5444 5444 Size: 6613 AhdI GACnn_n'nnGTC Cuts at: 5342 5342 Size: 6613 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6613 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 6613 AlwNI CAG_nnn'CTG Cuts at: 3058 3095 3504 4356 5928 3058 Size: 37 409 852 1572 3743 Fragments arranged by size: 3743 1572 852 409 37 ApaI G_GGCC'C Cuts at: 2319 2539 2319 Size: 220 6393 ApaLI G'TGCA_C Cuts at: 3821 4670 5826 3821 Size: 849 1156 4608 Fragments arranged by size: 4608 1156 849 ApoI r'AATT_y Cuts at: 1493 3922 4148 4300 6409 1493 Size: 2429 226 152 2109 1697 Fragments arranged by size: 2429 2109 1697 226 152 AseI AT'TA_AT Cuts at: 160 1032 5167 160 Size: 872 4135 1606 Fragments arranged by size: 4135 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6613 AvaI C'yCGr_G Cuts at: 1870 1943 3938 1870 Size: 73 1995 4545 Fragments arranged by size: 4545 1995 73 AvrII C'CTAG_G Cuts at: 2311 2311 Size: 6613 BamHI G'GATC_C Cuts at: 3943 4310 3943 Size: 367 6246 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2222 2354 3934 5389 618 Size: 325 217 627 435 132 1580 1455 1842 Fragments arranged by size: 1842 1580 1455 627 435 325 217 132 BanII G_rGCy'C Cuts at: 1391 2026 2289 2319 2539 2922 3291 3695 3932 Size: 635 263 30 220 383 369 404 237 Cuts at: 3932 1391 Size: 4072 Fragments arranged by size: 4072 635 404 383 369 263 237 220 30 BbeI G_GCGC'C Cuts at: 2226 2358 2226 Size: 132 6481 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2709 2847 928 Size: 971 810 138 4694 Fragments arranged by size: 4694 971 810 138 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 4804 4838 1903 Size: 34 2867 34 3678 Fragments arranged by size: 3678 2867 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2708 4505 5715 2708 Size: 1797 1210 3606 Fragments arranged by size: 3606 1797 1210 BclI T'GATC_A Cuts at: 1548 2409 1548 Size: 861 5752 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3788 5224 136 Size: 107 122 71 631 605 2116 1436 1525 Fragments arranged by size: 2116 1525 1436 631 605 122 107 71 BglII A'GATC_T Cuts at: 2886 6608 2886 Size: 3722 2891 BlpI GC'TnA_GC Cuts at: 3609 4030 3609 Size: 421 6192 Bme1580I G_kGCm'C Cuts at: 1790 2238 2319 2539 3825 4674 5830 1790 Size: 448 81 220 1286 849 1156 2573 Fragments arranged by size: 2573 1286 1156 849 448 220 81 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 6613 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2061 2830 3748 Size: 416 53 83 399 24 644 769 918 Cuts at: 3748 4344 5302 442 Size: 596 958 1753 Fragments arranged by size: 1753 958 918 769 644 596 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6613 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2045 2810 2045 Size: 765 5848 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2000 2290 2303 2525 2605 3236 3773 5273 Size: 761 290 13 222 80 631 537 1500 Cuts at: 5273 1239 Size: 2579 Fragments arranged by size: 2579 1500 761 631 537 290 222 80 13 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2687 4738 5603 5901 2687 Size: 2051 865 298 3399 Fragments arranged by size: 3399 2051 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3212 5276 882 Size: 617 1713 2064 2219 Fragments arranged by size: 2219 2064 1713 617 BsaAI yAC'GTr Cuts at: 493 1204 2422 3411 4404 493 Size: 711 1218 989 993 2702 Fragments arranged by size: 2702 1218 993 989 711 BsaBI GATnn'nnATC Cuts at: 6607 6607 Size: 6613 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2223 2355 4420 4802 Size: 53 83 186 936 690 132 2065 382 Cuts at: 4802 5437 275 Size: 635 1451 Fragments arranged by size: 2065 1451 936 690 635 382 186 132 83 53 BsaWI w'CCGG_w Cuts at: 3762 5046 5444 5718 5865 6276 3762 Size: 1284 398 274 147 411 4099 Fragments arranged by size: 4099 1284 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2501 2531 3887 3917 1178 Size: 30 165 30 1098 30 1356 30 3874 Fragments arranged by size: 3874 1356 1098 165 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2232 2591 2912 3770 3908 3911 3914 1186 Size: 1046 359 321 858 138 3 3 3885 Fragments arranged by size: 3885 1046 858 359 321 138 3 3 BseYI C'CCAG_C Cuts at: 2570 3037 3058 3472 3523 3616 3655 3791 5816 Size: 467 21 414 51 93 39 136 2025 Cuts at: 5816 6312 2570 Size: 496 2871 Fragments arranged by size: 2871 2025 496 467 414 136 93 51 39 21 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2091 2542 1163 Size: 573 355 451 5234 Fragments arranged by size: 5234 573 451 355 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3728 4063 4824 5852 1540 Size: 275 186 1727 335 761 1028 2301 Fragments arranged by size: 2301 1727 1028 761 335 275 186 BsiHKAI G_wGCw'C Cuts at: 2026 2289 2427 2472 2511 3825 4674 4759 5830 Size: 263 138 45 39 1314 849 85 1071 Cuts at: 5830 2026 Size: 2809 Fragments arranged by size: 2809 1314 1071 849 263 138 85 45 39 BsmI GAATG_Cn' Cuts at: 3438 4124 4217 3438 Size: 686 93 5834 Fragments arranged by size: 5834 686 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2026 2238 2289 2319 2427 2472 2511 Size: 399 236 212 51 30 108 45 39 Cuts at: 2511 2539 2922 3291 3695 3825 3932 4674 4759 Size: 28 383 369 404 130 107 742 85 Cuts at: 4759 5830 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 404 399 383 369 236 212 130 108 107 85 51 45 39 30 28 BspEI T'CCGG_A Cuts at: 6276 6276 Size: 6613 BspHI T'CATG_A Cuts at: 3648 4502 6232 3648 Size: 854 1730 4029 Fragments arranged by size: 4029 1730 854 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2061 2564 3267 3968 844 Size: 1217 503 703 701 3489 Fragments arranged by size: 3489 1217 703 701 503 BsrBI CCG'CTC Cuts at: 1394 1823 3706 4500 1394 Size: 429 1883 794 3507 Fragments arranged by size: 3507 1883 794 429 BsrDI GCAATG_nn' Cuts at: 65 1248 5108 5282 65 Size: 1183 3860 174 1396 Fragments arranged by size: 3860 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2357 3723 3727 5257 5444 1700 Size: 110 547 1366 4 1530 187 2869 Fragments arranged by size: 2869 1530 1366 547 187 110 4 BsrGI T'GTAC_A Cuts at: 96 96 Size: 6613 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 6613 BssSI C'ACGA_G Cuts at: 2231 4673 5685 2231 Size: 2442 1012 3159 Fragments arranged by size: 3159 2442 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 6613 BstBI TT'CG_AA Cuts at: 5417 5417 Size: 6613 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 6613 BstXI CCAn_nnnn'nTGG Cuts at: 2805 3010 3535 3874 2805 Size: 205 525 339 5544 Fragments arranged by size: 5544 525 339 205 BstYI r'GATC_y Cuts at: 1972 2640 2886 3943 4310 4695 4712 6164 6250 Size: 668 246 1057 367 385 17 1452 86 Cuts at: 6250 6262 6608 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 1057 668 385 367 346 246 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2782 3732 513 Size: 552 1717 950 3394 Fragments arranged by size: 3394 1717 950 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2094 2398 487 Size: 683 56 868 304 4702 Fragments arranged by size: 4702 868 683 304 56 BtsI GCAGTG_nn' Cuts at: 4129 4923 4943 4129 Size: 794 20 5799 Fragments arranged by size: 5799 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6613 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 3397 3432 529 Size: 35 2833 35 3710 Fragments arranged by size: 3710 2833 35 35 DraI TTT'AAA Cuts at: 3917 3917 Size: 6613 DraIII CAC_nnn'GTG Cuts at: 3411 3411 Size: 6613 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 5620 809 Size: 507 4304 1802 Fragments arranged by size: 4304 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2253 2391 2742 Size: 54 1425 50 275 18 423 138 351 Cuts at: 2742 3300 3725 3729 3780 3864 4060 4949 6578 Size: 558 425 4 51 84 196 889 1629 Cuts at: 6578 8 Size: 43 Fragments arranged by size: 1629 1425 889 558 425 423 351 275 196 138 84 54 51 50 43 18 4 EagI C'GGCC_G Cuts at: 1537 1812 3725 4060 1537 Size: 275 1913 335 4090 Fragments arranged by size: 4090 1913 335 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2279 2351 2432 2441 2886 3170 3681 4543 Size: 926 72 81 9 445 284 511 862 Cuts at: 4543 1353 Size: 3423 Fragments arranged by size: 3423 926 862 511 445 284 81 72 9 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 5200 5574 5720 387 Size: 1064 138 3611 374 146 1280 Fragments arranged by size: 3611 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2024 2287 2024 Size: 263 6350 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2000 2290 2303 2525 2605 2867 3236 Size: 393 368 290 13 222 80 262 369 Cuts at: 3236 3481 3773 4676 5273 6060 6328 1239 Size: 245 292 903 597 787 268 1524 Fragments arranged by size: 1524 903 787 597 393 369 368 292 290 268 262 245 222 80 13 EcoO109I rG'GnC_Cy Cuts at: 2315 2316 2535 2536 2802 3092 3501 2315 Size: 1 219 1 266 290 409 5427 Fragments arranged by size: 5427 409 290 266 219 1 1 EcoRI G'AATT_C Cuts at: 3922 4300 3922 Size: 378 6235 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2155 2897 2155 Size: 742 5871 FseI GG_CCGG'CC Cuts at: 3731 3731 Size: 6613 FspI TGC'GCA Cuts at: 3830 5119 3830 Size: 1289 5324 HaeII r_GCGC'y Cuts at: 1678 2191 2226 2358 3378 5760 1678 Size: 513 35 132 1020 2382 2531 Fragments arranged by size: 2531 2382 1020 513 132 35 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3887 3919 5254 5286 5328 Size: 32 135 32 2315 32 1335 32 42 Cuts at: 5328 5360 1373 Size: 32 2626 Fragments arranged by size: 2626 2315 1335 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2086 3957 4203 669 Size: 988 281 148 1871 246 3079 Fragments arranged by size: 3079 1871 988 281 246 148 HindIII A'AGCT_T Cuts at: 748 748 Size: 6613 HpaI GTT'AAC Cuts at: 4203 4203 Size: 6613 KasI G'GCGC_C Cuts at: 2222 2354 2222 Size: 132 6481 KpnI G_GTAC'C Cuts at: 3938 3938 Size: 6613 MfeI C'AATT_G Cuts at: 4212 4212 Size: 6613 MluI A'CGCG_T Cuts at: 6489 6489 Size: 6613 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 3736 5727 5911 1305 Size: 2431 1991 184 2007 Fragments arranged by size: 2431 2007 1991 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2255 2393 3302 3782 10 Size: 54 1425 343 423 138 909 480 2841 Fragments arranged by size: 2841 1425 909 480 423 343 138 54 MslI CAynn'nnrTG Cuts at: 518 1166 3131 3296 3464 3626 3668 3776 3872 Size: 648 1965 165 168 162 42 108 96 Cuts at: 3872 4571 4930 5089 518 Size: 699 359 159 2042 Fragments arranged by size: 2042 1965 699 648 359 168 165 162 159 108 96 42 MspA1I CmG'CkG Cuts at: 1606 2646 2784 3233 3659 4029 4706 5854 6099 Size: 1040 138 449 426 370 677 1148 245 Cuts at: 6099 1606 Size: 2120 Fragments arranged by size: 2120 1148 1040 677 449 426 370 245 138 NaeI GCC'GGC Cuts at: 2359 3725 3729 2359 Size: 1366 4 5243 Fragments arranged by size: 5243 1366 4 NarI GG'CG_CC Cuts at: 2223 2355 2223 Size: 132 6481 NcoI C'CATG_G Cuts at: 513 1065 3732 513 Size: 552 2667 3394 Fragments arranged by size: 3394 2667 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 6613 NgoMIV G'CCGG_C Cuts at: 2357 3723 3727 2357 Size: 1366 4 5243 Fragments arranged by size: 5243 1366 4 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6613 NotI GC'GGCC_GC Cuts at: 4060 4060 Size: 6613 NspI r_CATG'y Cuts at: 1132 1229 3049 3346 3667 3775 3829 3971 5516 Size: 97 1820 297 321 108 54 142 1545 Cuts at: 5516 1132 Size: 2229 Fragments arranged by size: 2229 1820 1545 321 297 142 108 97 54 PasI CC'CwG_GG Cuts at: 1348 2293 2463 2633 2798 2899 3603 1348 Size: 945 170 170 165 101 704 4358 Fragments arranged by size: 4358 945 704 170 170 165 101 PciI A'CATG_T Cuts at: 3045 5512 3045 Size: 2467 4146 PflMI CCAn_nnn'nTGG Cuts at: 1108 2865 3738 1108 Size: 1757 873 3983 Fragments arranged by size: 3983 1757 873 PfoI T'CCnGG_A Cuts at: 2280 2280 Size: 6613 PmeI GTTT'AAAC Cuts at: 3917 3917 Size: 6613 PmlI CAC'GTG Cuts at: 3411 3411 Size: 6613 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4682 4714 6195 6227 4682 Size: 32 1481 32 5068 Fragments arranged by size: 5068 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6613 PsiI TTA'TAA Cuts at: 4183 4183 Size: 6613 PspOMI G'GGCC_C Cuts at: 2315 2535 2315 Size: 220 6393 PstI C_TGCA'G Cuts at: 830 3965 830 Size: 3135 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6613 PvuII CAG'CTG Cuts at: 3233 3659 3233 Size: 426 6187 SacI G_AGCT'C Cuts at: 2026 2289 2026 Size: 263 6350 SacII CC_GC'GG Cuts at: 2785 2785 Size: 6613 SalI G'TCGA_C Cuts at: 1936 2084 3955 1936 Size: 148 1871 4594 Fragments arranged by size: 4594 1871 148 SapI GCTCTTCn'nnn_ Cuts at: 2432 2886 2432 Size: 454 6159 SbfI CC_TGCA'GG Cuts at: 3965 3965 Size: 6613 ScaI AGT'ACT Cuts at: 2582 4861 6573 2582 Size: 2279 1712 2622 Fragments arranged by size: 2622 2279 1712 SfcI C'TryA_G Cuts at: 826 1045 2962 3370 3961 5096 5777 5968 826 Size: 219 1917 408 591 1135 681 191 1471 Fragments arranged by size: 1917 1471 1135 681 591 408 219 191 SfoI GGC'GCC Cuts at: 2224 2356 2224 Size: 132 6481 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6613 SgrAI Cr'CCGG_yG Cuts at: 1700 2357 1700 Size: 657 5956 SmaI CCC'GGG Cuts at: 1872 3940 1872 Size: 2068 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2702 4717 5618 5880 820 Size: 197 926 759 2015 901 262 1553 Fragments arranged by size: 2015 1553 926 901 759 262 197 SnaBI TAC'GTA Cuts at: 493 4404 493 Size: 3911 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 6613 SphI G_CATG'C Cuts at: 1132 3667 3971 1132 Size: 2535 304 3774 Fragments arranged by size: 3774 2535 304 SspI AAT'ATT Cuts at: 5 52 4537 5 Size: 47 4485 2081 Fragments arranged by size: 4485 2081 47 StuI AGG'CCT Cuts at: 1517 2172 1517 Size: 655 5958 StyI C'CwwG_G Cuts at: 513 1065 2311 2520 2608 2859 3732 4052 513 Size: 552 1246 209 88 251 873 320 3074 Fragments arranged by size: 3074 1246 873 552 320 251 209 88 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2891 4640 4657 4810 4995 5440 325 Size: 1255 1311 1749 17 153 185 445 1498 Fragments arranged by size: 1749 1498 1311 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2580 3345 4859 Size: 274 80 33 51 1443 603 765 1514 Cuts at: 4859 6571 96 Size: 1712 138 Fragments arranged by size: 1712 1514 1443 765 603 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2501 2533 6573 6605 2501 Size: 32 4040 32 2509 Fragments arranged by size: 4040 2509 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 6613 XbaI T'CTAG_A Cuts at: 3949 3949 Size: 6613 XcmI CCAnnnn_n'nnnnTGG Cuts at: 3310 3310 Size: 6613 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6613 XmaI C'CCGG_G Cuts at: 1870 3938 1870 Size: 2068 4545 XmnI GAAnn'nnTTC Cuts at: 4742 4742 Size: 6613 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 4421 276 Size: 53 83 186 936 2887 2468 Fragments arranged by size: 2887 2468 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FseI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SacI SacII SalI SapI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI BaeI BbvCI BfrBI Bpu10I BsiWI BsmBI BstZ17I Bsu36I EcoNI EcoRV FspAI NruI NsiI PacI PpuMI PspXI PsrI RsrII SanDI SexAI SfiI SrfI SwaI