FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2409, 221 aa 1>>>pF1KE2409 221 - 221 aa - 221 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4156+/-0.000289; mu= 9.1940+/- 0.018 mean_var=91.4710+/-18.401, 0's: 0 Z-trim(119.9): 7 B-trim: 0 in 0/54 Lambda= 0.134101 statistics sampled from 34568 (34575) to 34568 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.405), width: 16 Scan time: 5.480 The best scores are: opt bits E(85289) NP_085048 (OMIM: 612050) NEDD4 family-interacting ( 221) 1506 300.6 1.4e-81 XP_006719903 (OMIM: 610041) PREDICTED: NEDD4 famil ( 335) 822 168.3 1.3e-41 NP_061953 (OMIM: 610041) NEDD4 family-interacting ( 336) 822 168.3 1.3e-41 NP_001154879 (OMIM: 610041) NEDD4 family-interacti ( 316) 410 88.6 1.2e-17 >>NP_085048 (OMIM: 612050) NEDD4 family-interacting prot (221 aa) initn: 1506 init1: 1506 opt: 1506 Z-score: 1585.9 bits: 300.6 E(85289): 1.4e-81 Smith-Waterman score: 1506; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221) 10 20 30 40 50 60 pF1KE2 MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 FPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFML 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_085 TFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWL 130 140 150 160 170 180 190 200 210 220 pF1KE2 WWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY ::::::::::::::::::::::::::::::::::::::::: NP_085 WWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY 190 200 210 220 >>XP_006719903 (OMIM: 610041) PREDICTED: NEDD4 family-in (335 aa) initn: 910 init1: 669 opt: 822 Z-score: 867.9 bits: 168.3 E(85289): 1.3e-41 Smith-Waterman score: 822; 56.6% identity (76.3% similar) in 219 aa overlap (9-220:117-334) 10 20 30 pF1KE2 MALALAALAAVE-PACGSRYQQLQNEEESGEPEQAAGD .:.: : .. :. . :. : . . XP_006 KPDPEPGRMDHHQPGTGRYQLLNEEDNSESSAIEQPPTSNPAPQIV-QAASSAPALETDS 90 100 110 120 130 140 40 50 60 70 80 90 pF1KE2 APPPYSSISAESAAYFDYKDESGF-PKPPSYNVATTLPSYDEAERTKAEATIPLVPG--- .:::::::..: . : . . : : :: :.:::.::.:::::..:: : . XP_006 SPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQ 150 160 170 180 190 200 100 110 120 130 140 150 pF1KE2 --RDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAIS ..:. ::::.::::::.::::::::.:::::.:::.:: ::::.:.. ::::::: XP_006 RIQEEECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAIC 210 220 230 240 250 260 160 170 180 190 200 210 pF1KE2 GFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSN :::::::::::::::: :: :::.:::::::.:::::.:::.:::.:: :::.: :... XP_006 GFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAA 270 280 290 300 310 320 220 pF1KE2 LPRTRVLFIY ::: .:. XP_006 AHRTRYFFLL 330 >>NP_061953 (OMIM: 610041) NEDD4 family-interacting prot (336 aa) initn: 922 init1: 669 opt: 822 Z-score: 867.9 bits: 168.3 E(85289): 1.3e-41 Smith-Waterman score: 826; 55.9% identity (73.1% similar) in 238 aa overlap (12-220:99-335) 10 20 30 pF1KE2 MALALAALAAVEPACGSRYQQLQNEEESGE----------- .:. : ::: : :::...: NP_061 SSTGVAVGAEHGEDSLSRKPDPEPGRMDHHQPGTG-RYQVLLNEEDNSESSAIEQPPTSN 70 80 90 100 110 120 40 50 60 70 pF1KE2 --PE--QAAGDAP--------PPYSSISAESAAYFDYKDESGF-PKPPSYNVATTLPSYD :. :::..:: ::::::..: . : . . : : :: :.:::.::.:: NP_061 PAPQIVQAASSAPALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYD 130 140 150 160 170 180 80 90 100 110 120 130 pF1KE2 EAERTKAEATIPLVPG-----RDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLFNWIG :::..:: : . ..:. ::::.::::::.::::::::.:::::.:::.: NP_061 EAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLG 190 200 210 220 230 240 140 150 160 170 180 190 pF1KE2 FFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLF : ::::.:.. ::::::: :::::::::::::::: :: :::.:::::::.:::::.::: NP_061 FCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLF 250 260 270 280 290 300 200 210 220 pF1KE2 LRGFINYAKVRKMPETFSNLPRTRVLFIY .:::.:: :::.: :... ::: .:. NP_061 FRGFVNYLKVRNMSESMAAAHRTRYFFLL 310 320 330 >>NP_001154879 (OMIM: 610041) NEDD4 family-interacting p (316 aa) initn: 762 init1: 410 opt: 410 Z-score: 437.5 bits: 88.6 E(85289): 1.2e-17 Smith-Waterman score: 664; 50.0% identity (65.5% similar) in 238 aa overlap (12-220:99-315) 10 20 30 pF1KE2 MALALAALAAVEPACGSRYQQLQNEEESGE----------- .:. : ::: : :::...: NP_001 SSTGVAVGAEHGEDSLSRKPDPEPGRMDHHQPGTG-RYQVLLNEEDNSESSAIEQPPTSN 70 80 90 100 110 120 40 50 60 70 pF1KE2 --PE--QAAGDAP--------PPYSSISAESAAYFDYKDESGF-PKPPSYNVATTLPSYD :. :::..:: ::::::..: . : . . : : :: :.:::.::.:: NP_001 PAPQIVQAASSAPALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYD 130 140 150 160 170 180 80 90 100 110 120 130 pF1KE2 EAERTKAEATIPLVPG-----RDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLFNWIG :::..:: : . ..:. ::::.::::::.::::::::.:: NP_001 EAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLRVGNDGIFMLAFF--------- 190 200 210 220 230 140 150 160 170 180 190 pF1KE2 FFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLF .:::::: :::::::::::::::: :: :::.:::::::.:::::.::: NP_001 -----------TGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLF 240 250 260 270 280 200 210 220 pF1KE2 LRGFINYAKVRKMPETFSNLPRTRVLFIY .:::.:: :::.: :... ::: .:. NP_001 FRGFVNYLKVRNMSESMAAAHRTRYFFLL 290 300 310 221 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 20:48:17 2016 done: Sat Nov 5 20:48:17 2016 Total Scan time: 5.480 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]