FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2409, 221 aa 1>>>pF1KE2409 221 - 221 aa - 221 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2705+/-0.000643; mu= 10.0338+/- 0.039 mean_var=84.7968+/-16.746, 0's: 0 Z-trim(113.0): 7 B-trim: 0 in 0/51 Lambda= 0.139279 statistics sampled from 13654 (13660) to 13654 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.42), width: 16 Scan time: 2.400 The best scores are: opt bits E(32554) CCDS4273.1 NDFIP1 gene_id:80762|Hs108|chr5 ( 221) 1506 311.5 2.8e-85 CCDS31998.1 NDFIP2 gene_id:54602|Hs108|chr13 ( 336) 822 174.1 9.5e-44 >>CCDS4273.1 NDFIP1 gene_id:80762|Hs108|chr5 (221 aa) initn: 1506 init1: 1506 opt: 1506 Z-score: 1644.6 bits: 311.5 E(32554): 2.8e-85 Smith-Waterman score: 1506; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221) 10 20 30 40 50 60 pF1KE2 MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 FPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFML 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 TFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWL 130 140 150 160 170 180 190 200 210 220 pF1KE2 WWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY ::::::::::::::::::::::::::::::::::::::::: CCDS42 WWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY 190 200 210 220 >>CCDS31998.1 NDFIP2 gene_id:54602|Hs108|chr13 (336 aa) initn: 922 init1: 669 opt: 822 Z-score: 898.9 bits: 174.1 E(32554): 9.5e-44 Smith-Waterman score: 826; 55.9% identity (73.1% similar) in 238 aa overlap (12-220:99-335) 10 20 30 pF1KE2 MALALAALAAVEPACGSRYQQLQNEEESGE----------- .:. : ::: : :::...: CCDS31 SSTGVAVGAEHGEDSLSRKPDPEPGRMDHHQPGTG-RYQVLLNEEDNSESSAIEQPPTSN 70 80 90 100 110 120 40 50 60 70 pF1KE2 --PE--QAAGDAP--------PPYSSISAESAAYFDYKDESGF-PKPPSYNVATTLPSYD :. :::..:: ::::::..: . : . . : : :: :.:::.::.:: CCDS31 PAPQIVQAASSAPALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYD 130 140 150 160 170 180 80 90 100 110 120 130 pF1KE2 EAERTKAEATIPLVPG-----RDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLFNWIG :::..:: : . ..:. ::::.::::::.::::::::.:::::.:::.: CCDS31 EAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLG 190 200 210 220 230 240 140 150 160 170 180 190 pF1KE2 FFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLF : ::::.:.. ::::::: :::::::::::::::: :: :::.:::::::.:::::.::: CCDS31 FCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLF 250 260 270 280 290 300 200 210 220 pF1KE2 LRGFINYAKVRKMPETFSNLPRTRVLFIY .:::.:: :::.: :... ::: .:. CCDS31 FRGFVNYLKVRNMSESMAAAHRTRYFFLL 310 320 330 221 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 20:48:16 2016 done: Sat Nov 5 20:48:16 2016 Total Scan time: 2.400 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]