FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5270, 208 aa
  1>>>pF1KE5270 208 - 208 aa - 208 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7454+/-0.000664; mu= 12.4494+/- 0.040
 mean_var=87.5675+/-16.586, 0's: 0 Z-trim(112.6): 31  B-trim: 0 in 0/51
 Lambda= 0.137058
 statistics sampled from 13270 (13299) to 13270 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.409), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS4223.1 HBEGF gene_id:1839|Hs108|chr5           ( 208) 1389 283.6 5.8e-77
CCDS3565.1 AREG gene_id:374|Hs108|chr4             ( 252)  281 64.6   6e-11


>>CCDS4223.1 HBEGF gene_id:1839|Hs108|chr5                (208 aa)
 initn: 1389 init1: 1389 opt: 1389  Z-score: 1495.2  bits: 283.6 E(32554): 5.8e-77
Smith-Waterman score: 1389; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KE5 MKLLPSVVLKLFLAAVLSALVTGESLERLRRGLAAGTSNPDPPTVSTDQLLPLGGGRDRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MKLLPSVVLKLFLAAVLSALVTGESLERLRRGLAAGTSNPDPPTVSTDQLLPLGGGRDRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VRDLQEADLDLLRVTLSSKPQALATPNKEEHGKRKKKGKGLGKKRDPCLRKYKDFCIHGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VRDLQEADLDLLRVTLSSKPQALATPNKEEHGKRKKKGKGLGKKRDPCLRKYKDFCIHGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 CKYVKELRAPSCICHPGYHGERCHGLSLPVENRLYTYDHTTILAVVAVVLSSVCLLVIVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CKYVKELRAPSCICHPGYHGERCHGLSLPVENRLYTYDHTTILAVVAVVLSSVCLLVIVG
              130       140       150       160       170       180

              190       200        
pF1KE5 LLMFRYHRRGGYDVENEEKVKLGMTNSH
       ::::::::::::::::::::::::::::
CCDS42 LLMFRYHRRGGYDVENEEKVKLGMTNSH
              190       200        

>>CCDS3565.1 AREG gene_id:374|Hs108|chr4                  (252 aa)
 initn: 259 init1: 195 opt: 281  Z-score: 310.0  bits: 64.6 E(32554): 6e-11
Smith-Waterman score: 281; 34.5% identity (60.8% similar) in 148 aa overlap (70-208:100-247)

      40        50        60        70        80          90       
pF1KE5 PDPPTVSTDQLLPLGGGRDRKVRDLQEADLDLLRVTLSSKP--QALATPNKEEHGKRKKK
                                     : .::    ::  .   . :  .. :::::
CCDS35 PSSSEPSSGADYDYSEEYDNEPQIPGYIVDDSVRVEQVVKPPQNKTESENTSDKPKRKKK
      70        80        90       100       110       120         

       100             110       120       130       140       150 
pF1KE5 GKGLGK------KRDPCLRKYKDFCIHGECKYVKELRAPSCICHPGYHGERCHGLSLPVE
       :   ::      :..::  ....:::::::::...:.: .: :.  : ::::   :. ..
CCDS35 GGKNGKNRRNRKKKNPCNAEFQNFCIHGECKYIEHLEAVTCKCQQEYFGERCGEKSMKTH
     130       140       150       160       170       180         

             160       170        180       190       200          
pF1KE5 NRLYTYDHTTILAVVAVVLSSVCLLVI-VGLLMFRYHRRGGYDVENEEKVKLGMTNSH  
       . . .      ::..:. .:.: : .. :  ...: .    :. : ::. :: . :..  
CCDS35 SMIDSSLSKIALAAIAAFMSAVILTAVAVITVQLRRQYVRKYEGEAEERKKLRQENGNVH
     190       200       210       220       230       240         

CCDS35 AIA
     250  




208 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:26:05 2016 done: Tue Nov  8 07:26:05 2016
 Total Scan time:  2.040 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]