FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6644, 242 aa 1>>>pF1KE6644 242 - 242 aa - 242 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7085+/-0.000299; mu= 14.3249+/- 0.019 mean_var=91.8641+/-18.361, 0's: 0 Z-trim(118.9): 8 B-trim: 0 in 0/53 Lambda= 0.133814 statistics sampled from 32258 (32266) to 32258 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.378), width: 16 Scan time: 5.010 The best scores are: opt bits E(85289) NP_803431 (OMIM: 608847) ferritin, mitochondrial p ( 242) 1644 326.6 2.3e-89 NP_002023 (OMIM: 134770,615517) ferritin heavy cha ( 183) 981 198.5 6.4e-51 NP_114100 (OMIM: 300308) ferritin heavy polypeptid ( 183) 752 154.3 1.3e-37 NP_000137 (OMIM: 134790,600886,606159,615604) ferr ( 175) 654 135.4 6.3e-32 >>NP_803431 (OMIM: 608847) ferritin, mitochondrial precu (242 aa) initn: 1644 init1: 1644 opt: 1644 Z-score: 1725.2 bits: 326.6 E(85289): 2.3e-89 Smith-Waterman score: 1644; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242) 10 20 30 40 50 60 pF1KE6 MLSCFRLLSRHISPSLASLRPVRCCFALPLRWAPGRPLDPRQIAPRRPLAAAASSRDPTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_803 MLSCFRLLSRHISPSLASLRPVRCCFALPLRWAPGRPLDPRQIAPRRPLAAAASSRDPTG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PAAGPSRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_803 PAAGPSRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EETEHAEKLMRLQNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_803 EETEHAEKLMRLQNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHAL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGAPDAGLAEYLFDTHTLGNENK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_803 ASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGAPDAGLAEYLFDTHTLGNENK 190 200 210 220 230 240 pF1KE6 QN :: NP_803 QN >>NP_002023 (OMIM: 134770,615517) ferritin heavy chain [ (183 aa) initn: 986 init1: 971 opt: 981 Z-score: 1035.1 bits: 198.5 E(85289): 6.4e-51 Smith-Waterman score: 981; 80.6% identity (93.9% similar) in 180 aa overlap (63-242:4-183) 40 50 60 70 80 90 pF1KE6 APGRPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASY :. :.::::.: :::::::::::::::::: NP_002 MTTASTSQVRQNYHQDSEAAINRQINLELYASY 10 20 30 100 110 120 130 140 150 pF1KE6 VYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDD :::::.:::.::::::.::..::::::.:: :::::::.::::::::: :::::::. :: NP_002 VYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDD 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE6 WESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHV :::::.:::::: ::::::::::::: ::.::.:::::::.::.:::::::.:::::::: NP_002 WESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHV 100 110 120 130 140 150 220 230 240 pF1KE6 HNLVKMGAPDAGLAEYLFDTHTLGNENKQN :: :::::..:::::::: ::::. .... NP_002 TNLRKMGAPESGLAEYLFDKHTLGDSDNES 160 170 180 >>NP_114100 (OMIM: 300308) ferritin heavy polypeptide-li (183 aa) initn: 765 init1: 749 opt: 752 Z-score: 796.2 bits: 154.3 E(85289): 1.3e-37 Smith-Waterman score: 752; 65.4% identity (85.5% similar) in 179 aa overlap (63-241:4-182) 40 50 60 70 80 90 pF1KE6 APGRPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASY : ::.:::.. . .:::: .:.::::.:: NP_114 MATAQPSQVRQKYDTNCDAAINSHITLELYTSY 10 20 30 100 110 120 130 140 150 pF1KE6 VYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDD .:::::.::.::::::.:: ::::. : .. :::.::::::: :::.: :.::.::: . NP_114 LYLSMAFYFNRDDVALENFFRYFLRLSDDKMEHAQKLMRLQNLRGGHICLHDIRKPECQG 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE6 WESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHV ::::: ::: :. ::::::::::.:. :: .::::.:: :::..::.::::.::::: .: NP_114 WESGLVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIKELGGYV 100 110 120 130 140 150 220 230 240 pF1KE6 HNLVKMGAPDAGLAEYLFDTHTLGNENKQN :: :. .:.::::::::: :::.. :. NP_114 SNLRKICSPEAGLAEYLFDKLTLGGRVKET 160 170 180 >>NP_000137 (OMIM: 134790,600886,606159,615604) ferritin (175 aa) initn: 660 init1: 644 opt: 654 Z-score: 694.2 bits: 135.4 E(85289): 6.3e-32 Smith-Waterman score: 654; 54.3% identity (82.7% similar) in 173 aa overlap (66-238:3-175) 40 50 60 70 80 90 pF1KE6 RPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASYVYL :..:::. : :::.: .:: : :::.:: NP_000 MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYL 10 20 30 100 110 120 130 140 150 pF1KE6 SMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDDWES :...::.::::::.. :..: . ..:. : :.:...::::::: .:::::: .:.: . NP_000 SLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGK 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE6 GLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNL ::. :. :::..::.::.::::.: . ::::::::::..:.:.:: ::..:::. :: NP_000 TPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNL 100 110 120 130 140 150 220 230 240 pF1KE6 VKMGAPDAGLAEYLFDTHTLGNENKQN ..:.:.:::.::::. :: .. NP_000 HRLGGPEAGLGEYLFERLTLKHD 160 170 242 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:03:55 2016 done: Tue Nov 8 15:03:56 2016 Total Scan time: 5.010 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]