FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2592, 224 aa 1>>>pF1KE2592 224 - 224 aa - 224 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5285+/-0.000683; mu= 18.0393+/- 0.041 mean_var=59.8033+/-11.842, 0's: 0 Z-trim(109.6): 28 B-trim: 0 in 0/50 Lambda= 0.165849 statistics sampled from 10953 (10976) to 10953 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.337), width: 16 Scan time: 1.410 The best scores are: opt bits E(32554) CCDS4120.1 TMED7 gene_id:51014|Hs108|chr5 ( 224) 1507 368.4 2e-102 CCDS54887.1 TICAM2 gene_id:100302736|Hs108|chr5 ( 404) 1302 319.6 1.9e-87 CCDS54888.1 TICAM2 gene_id:100302736|Hs108|chr5 ( 188) 1287 315.7 1.3e-86 CCDS10310.1 TMED3 gene_id:23423|Hs108|chr15 ( 217) 956 236.6 9.7e-63 CCDS73768.1 TMED3 gene_id:23423|Hs108|chr15 ( 155) 600 151.3 3.3e-37 CCDS81914.1 TMED3 gene_id:23423|Hs108|chr15 ( 173) 594 149.9 9.7e-37 CCDS9250.1 TMED2 gene_id:10959|Hs108|chr12 ( 201) 407 105.2 3.2e-23 CCDS53342.1 TMED5 gene_id:50999|Hs108|chr1 ( 193) 261 70.2 1e-12 CCDS9840.1 TMED10 gene_id:10972|Hs108|chr14 ( 219) 258 69.6 1.8e-12 CCDS12249.1 TMED1 gene_id:11018|Hs108|chr19 ( 227) 256 69.1 2.6e-12 CCDS5493.1 TMED4 gene_id:222068|Hs108|chr7 ( 227) 242 65.7 2.7e-11 CCDS4428.1 TMED9 gene_id:54732|Hs108|chr5 ( 235) 238 64.8 5.3e-11 >>CCDS4120.1 TMED7 gene_id:51014|Hs108|chr5 (224 aa) initn: 1507 init1: 1507 opt: 1507 Z-score: 1952.2 bits: 368.4 E(32554): 2e-102 Smith-Waterman score: 1507; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224) 10 20 30 40 50 60 pF1KE2 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 LEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 TVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAE 130 140 150 160 170 180 190 200 210 220 pF1KE2 DLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS :::::::::::::::::::::::::::::::::::::::::::: CCDS41 DLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS 190 200 210 220 >>CCDS54887.1 TICAM2 gene_id:100302736|Hs108|chr5 (404 aa) initn: 1302 init1: 1302 opt: 1302 Z-score: 1683.6 bits: 319.6 E(32554): 1.9e-87 Smith-Waterman score: 1302; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAE 130 140 150 160 170 180 190 200 210 220 pF1KE2 DLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS ::::::::: CCDS54 DLNTRVAYWHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEE 190 200 210 220 230 240 >>CCDS54888.1 TICAM2 gene_id:100302736|Hs108|chr5 (188 aa) initn: 1287 init1: 1287 opt: 1287 Z-score: 1668.7 bits: 315.7 E(32554): 1.3e-86 Smith-Waterman score: 1287; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE2 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAE 130 140 150 160 170 180 190 200 210 220 pF1KE2 DLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS :::::::: CCDS54 DLNTRVAY >>CCDS10310.1 TMED3 gene_id:23423|Hs108|chr15 (217 aa) initn: 945 init1: 554 opt: 956 Z-score: 1239.9 bits: 236.6 E(32554): 9.7e-63 Smith-Waterman score: 956; 68.6% identity (88.4% similar) in 207 aa overlap (21-224:12-217) 10 20 30 40 50 pF1KE2 MPRPGSAQRWAAVAGRWGCRLLALLLL--VPGPGGASEITFELPDNAKQCFYEDIAQGTK :: :::: . : :: :.::::::::::::.:.. ::.: CCDS10 MGSTVPRSASVLLLLLLLRRAEQPCGA-ELTFELPDNAKQCFHEEVEQGVK 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 CTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFT .:..:::::::::::: .:::.:...:.: ::::::::. : .:.:.::::::::::. CCDS10 FSLDYQVITGGHYDVDCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 HKTVYFDFQVGEDPPLFPSE-NRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRS :::::::::::..::..:. :::.::::::::::.::::::.::: :::.:::::: :. CCDS10 HKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRA 120 130 140 150 160 170 180 190 200 210 220 pF1KE2 RAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS ::::::.::.::::::.. :.:::..::.::::::..:: . : : CCDS10 RAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKRPISRAVHS 180 190 200 210 >>CCDS73768.1 TMED3 gene_id:23423|Hs108|chr15 (155 aa) initn: 604 init1: 554 opt: 600 Z-score: 781.5 bits: 151.3 E(32554): 3.3e-37 Smith-Waterman score: 600; 66.9% identity (86.5% similar) in 133 aa overlap (21-150:12-143) 10 20 30 40 50 pF1KE2 MPRPGSAQRWAAVAGRWGCRLLALLLL--VPGPGGASEITFELPDNAKQCFYEDIAQGTK :: :::: . : :: :.::::::::::::.:.. ::.: CCDS73 MGSTVPRSASVLLLLLLLRRAEQPCGA-ELTFELPDNAKQCFHEEVEQGVK 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 CTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFT .:..:::::::::::: .:::.:...:.: ::::::::. : .:.:.::::::::::. CCDS73 FSLDYQVITGGHYDVDCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 HKTVYFDFQVGEDPPLFPSE-NRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRS :::::::::::..::..:. :::.:::: :: CCDS73 HKTVYFDFQVGDEPPILPDMGNRVTALTQGPSASPTPTPPLRVPV 120 130 140 150 180 190 200 210 220 pF1KE2 RAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS >>CCDS81914.1 TMED3 gene_id:23423|Hs108|chr15 (173 aa) initn: 615 init1: 554 opt: 594 Z-score: 773.1 bits: 149.9 E(32554): 9.7e-37 Smith-Waterman score: 594; 67.4% identity (87.6% similar) in 129 aa overlap (21-146:12-139) 10 20 30 40 50 pF1KE2 MPRPGSAQRWAAVAGRWGCRLLALLLL--VPGPGGASEITFELPDNAKQCFYEDIAQGTK :: :::: . : :: :.::::::::::::.:.. ::.: CCDS81 MGSTVPRSASVLLLLLLLRRAEQPCGA-ELTFELPDNAKQCFHEEVEQGVK 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 CTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFT .:..:::::::::::: .:::.:...:.: ::::::::. : .:.:.::::::::::. CCDS81 FSLDYQVITGGHYDVDCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 HKTVYFDFQVGEDPPLFPSE-NRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRS :::::::::::..::..:. :::.:::: CCDS81 HKTVYFDFQVGDEPPILPDMGNRVTALTQRFRGAYWKEVDKMVDYMQPGGTPATEGLGRL 120 130 140 150 160 170 >>CCDS9250.1 TMED2 gene_id:10959|Hs108|chr12 (201 aa) initn: 400 init1: 279 opt: 407 Z-score: 530.4 bits: 105.2 E(32554): 3.2e-23 Smith-Waterman score: 407; 35.2% identity (65.8% similar) in 193 aa overlap (24-216:8-199) 10 20 30 40 50 60 pF1KE2 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCT :.::. . .: . .:..::.: ...::: CCDS92 MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMG 10 20 30 40 70 80 90 100 110 120 pF1KE2 LEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHK : :.: :: :.: .. ::.: .:: ... ..::.: .:::::::::..::.: : CCDS92 LIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPK 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 TVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAE :.: ...:: : :... ...: . :. .: : ....:: :. . CCDS92 IVMFTIDIGEAPKGQDMETEAHQ-NKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIND 110 120 130 140 150 160 190 200 210 220 pF1KE2 DLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS . :.::. :: :::.:.....::.. :: :: .: CCDS92 NTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 170 180 190 200 >>CCDS53342.1 TMED5 gene_id:50999|Hs108|chr1 (193 aa) initn: 221 init1: 139 opt: 261 Z-score: 341.8 bits: 70.2 E(32554): 1e-12 Smith-Waterman score: 261; 28.9% identity (62.2% similar) in 180 aa overlap (21-190:13-188) 10 20 30 40 50 pF1KE2 MPRPGSAQRWAAVAGRWGCRLLALL--LLVPGPGG-----ASEITFELPDNAKQCFYEDI ::: : .:.:: .: :..:: :: . :.:::. . CCDS53 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPM 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 AQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNE .. .:.::. :. :.: .: .:.::.: :..:. :. . .. : : :::.: CCDS53 PLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKS-DGVHTVETEVGDYMFCFDNT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 FSTFTHKTVYFDF---QVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRL :::...:...:.. ..::. .:. . .: . ..... : .: . .. CCDS53 FSTISEKVIFFELILDNMGEQAQ--EQEDWKKYITGTDILDMKLEDILDPIIKIASDVQI 120 130 140 150 160 180 190 200 210 220 pF1KE2 REAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS : : . ....:. :. CCDS53 RLHLGIHQQHQVQTK-QKWAHTNSA 170 180 190 >>CCDS9840.1 TMED10 gene_id:10972|Hs108|chr14 (219 aa) initn: 224 init1: 104 opt: 258 Z-score: 337.2 bits: 69.6 E(32554): 1.8e-12 Smith-Waterman score: 258; 27.5% identity (56.5% similar) in 207 aa overlap (16-216:10-216) 10 20 30 40 50 pF1KE2 MPRPGSAQRWAAVAGRWGCRLLALLLL-VPGPGGASEITFELPDNAKQCFYEDIAQGTKC : : :::::: . :: . :.:.:: :...:. :.: . CCDS98 MSGLSGPPARRGPFPLALLLLFLLGPRLVLAISFHLPINSRKCLREEIHKDLLV 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 TLEFQVI--TGGHYDVDCRLE--DPDGKVLYKEMKKQYDSFTFTASKNGTYKFCF-SNEF : ... .:: . .:. : :..::.. .:.::. .. :: :. CCDS98 TGAYEISDQSGGAGGLRSHLKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 STFTHKTVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQ . . . : .:.. : . . .: : .: ... .:... .... :: . CCDS98 GRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEE 120 130 140 150 160 170 180 190 200 210 220 pF1KE2 GRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTTRVGS :. :. :::: :.:. . :. .. ::: :. ::. :. CCDS98 MRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 180 190 200 210 >>CCDS12249.1 TMED1 gene_id:11018|Hs108|chr19 (227 aa) initn: 372 init1: 246 opt: 256 Z-score: 334.4 bits: 69.1 E(32554): 2.6e-12 Smith-Waterman score: 362; 35.6% identity (58.4% similar) in 219 aa overlap (22-220:10-227) 10 20 30 40 50 pF1KE2 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGP---GGAS-------EITFELPDNAKQCFY ::: ::.: : :::. :.:: :: . ::::: CCDS12 MMAAGAALALALWLLMP-PVEVGGAGPPPIQDGEFTFLLPAGRKQCFY 10 20 30 40 60 70 80 90 100 110 pF1KE2 EDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCF .. ... :.::: :. ::: ::.:.: .: .: .: : .. : ::.:: CCDS12 QSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCF 50 60 70 80 90 100 120 130 140 150 160 pF1KE2 SNEFSTFTHKTVYF---------DFQV-GEDPPLFPSENRVSALTQMESACVSIHEALKS .: :::...: :.: : .: : . : : . ... . ... :. CCDS12 DNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLER 110 120 130 140 150 160 170 180 190 200 210 220 pF1KE2 VIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTT :.. : .: ::. :. : :: .::. .. .::.:.. :: :: ::.::: . : CCDS12 SIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT 170 180 190 200 210 220 pF1KE2 RVGS 224 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:43:20 2016 done: Tue Nov 8 16:43:20 2016 Total Scan time: 1.410 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]