FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1644, 159 aa
  1>>>pF1KE1644 159 - 159 aa - 159 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0253+/-0.000367; mu= 13.3793+/- 0.023
 mean_var=59.9653+/-11.660, 0's: 0 Z-trim(113.0): 7  B-trim: 0 in 0/51
 Lambda= 0.165624
 statistics sampled from 22132 (22136) to 22132 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.26), width:  16
 Scan time:  5.150

The best scores are:                                      opt bits E(85289)
NP_149024 (OMIM: 607003) thymic stromal lymphopoie ( 159) 1042 257.1 8.7e-69
NP_612561 (OMIM: 607003) thymic stromal lymphopoie (  63)  424 109.2 1.1e-24
XP_011542000 (OMIM: 607003) PREDICTED: thymic stro (  63)  424 109.2 1.1e-24


>>NP_149024 (OMIM: 607003) thymic stromal lymphopoietin   (159 aa)
 initn: 1042 init1: 1042 opt: 1042  Z-score: 1356.0  bits: 257.1 E(85289): 8.7e-69
Smith-Waterman score: 1042; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KE1 MFPFALLYVLSVSFRKIFILQLVGLVLTYDFTNCDFEKIKAAYLSTISKDLITYMSGTKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MFPFALLYVLSVSFRKIFILQLVGLVLTYDFTNCDFEKIKAAYLSTISKDLITYMSGTKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQINA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 TEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQINA
               70        80        90       100       110       120

              130       140       150         
pF1KE1 TQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ
       :::::::::::::::::::::::::::::::::::::::
NP_149 TQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ
              130       140       150         

>>NP_612561 (OMIM: 607003) thymic stromal lymphopoietin   (63 aa)
 initn: 424 init1: 424 opt: 424  Z-score: 563.9  bits: 109.2 E(85289): 1.1e-24
Smith-Waterman score: 424; 100.0% identity (100.0% similar) in 63 aa overlap (97-159:1-63)

         70        80        90       100       110       120      
pF1KE1 VSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQINATQAMKK
                                     ::::::::::::::::::::::::::::::
NP_612                               MFAMKTKAALAIWCPGYSETQINATQAMKK
                                             10        20        30

        130       140       150         
pF1KE1 RRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ
       :::::::::::::::::::::::::::::::::
NP_612 RRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ
               40        50        60   

>>XP_011542000 (OMIM: 607003) PREDICTED: thymic stromal   (63 aa)
 initn: 424 init1: 424 opt: 424  Z-score: 563.9  bits: 109.2 E(85289): 1.1e-24
Smith-Waterman score: 424; 100.0% identity (100.0% similar) in 63 aa overlap (97-159:1-63)

         70        80        90       100       110       120      
pF1KE1 VSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQINATQAMKK
                                     ::::::::::::::::::::::::::::::
XP_011                               MFAMKTKAALAIWCPGYSETQINATQAMKK
                                             10        20        30

        130       140       150         
pF1KE1 RRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ
       :::::::::::::::::::::::::::::::::
XP_011 RRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ
               40        50        60   




159 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:11:13 2016 done: Sun Nov  6 17:11:13 2016
 Total Scan time:  5.150 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]