FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1644, 159 aa
  1>>>pF1KE1644 159 - 159 aa - 159 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0037+/-0.000804; mu= 13.5668+/- 0.048
 mean_var=57.9995+/-11.428, 0's: 0 Z-trim(106.3): 11  B-trim: 0 in 0/50
 Lambda= 0.168408
 statistics sampled from 8902 (8903) to 8902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.273), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS4101.1 TSLP gene_id:85480|Hs108|chr5           ( 159) 1042 261.0 2.2e-70


>>CCDS4101.1 TSLP gene_id:85480|Hs108|chr5                (159 aa)
 initn: 1042 init1: 1042 opt: 1042  Z-score: 1377.2  bits: 261.0 E(32554): 2.2e-70
Smith-Waterman score: 1042; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KE1 MFPFALLYVLSVSFRKIFILQLVGLVLTYDFTNCDFEKIKAAYLSTISKDLITYMSGTKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MFPFALLYVLSVSFRKIFILQLVGLVLTYDFTNCDFEKIKAAYLSTISKDLITYMSGTKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQINA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQINA
               70        80        90       100       110       120

              130       140       150         
pF1KE1 TQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ
       :::::::::::::::::::::::::::::::::::::::
CCDS41 TQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ
              130       140       150         




159 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:11:12 2016 done: Sun Nov  6 17:11:12 2016
 Total Scan time:  1.760 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]