FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1665, 184 aa 1>>>pF1KE1665 184 - 184 aa - 184 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0521+/-0.000873; mu= 16.0034+/- 0.053 mean_var=130.2957+/-24.155, 0's: 0 Z-trim(111.4): 73 B-trim: 44 in 1/51 Lambda= 0.112359 statistics sampled from 12241 (12314) to 12241 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.378), width: 16 Scan time: 1.790 The best scores are: opt bits E(32554) CCDS3963.1 ESM1 gene_id:11082|Hs108|chr5 ( 184) 1349 229.1 1.2e-60 CCDS47206.1 ESM1 gene_id:11082|Hs108|chr5 ( 134) 746 131.1 2.7e-31 >>CCDS3963.1 ESM1 gene_id:11082|Hs108|chr5 (184 aa) initn: 1349 init1: 1349 opt: 1349 Z-score: 1202.3 bits: 229.1 E(32554): 1.2e-60 Smith-Waterman score: 1349; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KE1 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKDCPYGTFGMDCRETCNCQSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKDCPYGTFGMDCRETCNCQSG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ICDRGTGKCLKFPFFQYSVTKSSNRFVSLTEHDMASGDGNIVREEVVKENAAGSPVMRKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 ICDRGTGKCLKFPFFQYSVTKSSNRFVSLTEHDMASGDGNIVREEVVKENAAGSPVMRKW 130 140 150 160 170 180 pF1KE1 LNPR :::: CCDS39 LNPR >>CCDS47206.1 ESM1 gene_id:11082|Hs108|chr5 (134 aa) initn: 982 init1: 746 opt: 746 Z-score: 675.4 bits: 131.1 E(32554): 2.7e-31 Smith-Waterman score: 866; 72.8% identity (72.8% similar) in 184 aa overlap (1-184:1-134) 10 20 30 40 50 60 pF1KE1 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKDCPYGTFGMDCRETCNCQSG :::::::::::::::::::::::::::::::::::::::: CCDS47 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICK-------------------- 70 80 90 100 130 140 150 160 170 180 pF1KE1 ICDRGTGKCLKFPFFQYSVTKSSNRFVSLTEHDMASGDGNIVREEVVKENAAGSPVMRKW :::::::::::::::::::::::::::::: CCDS47 ------------------------------EHDMASGDGNIVREEVVKENAAGSPVMRKW 110 120 130 pF1KE1 LNPR :::: CCDS47 LNPR 184 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:14:15 2016 done: Sun Nov 6 17:14:16 2016 Total Scan time: 1.790 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]