FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6749, 542 aa 1>>>pF1KE6749 542 - 542 aa - 542 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.4410+/-0.000422; mu= -6.2981+/- 0.026 mean_var=243.8474+/-50.247, 0's: 0 Z-trim(118.5): 59 B-trim: 0 in 0/54 Lambda= 0.082133 statistics sampled from 31478 (31537) to 31478 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.37), width: 16 Scan time: 9.300 The best scores are: opt bits E(85289) NP_008930 (OMIM: 605198) non-canonical poly(A) RNA ( 542) 3609 441.0 4.3e-123 XP_005248291 (OMIM: 605198) PREDICTED: non-canonic ( 792) 3609 441.1 6e-123 NP_001165276 (OMIM: 605198) non-canonical poly(A) ( 541) 3590 438.8 2.1e-122 XP_016864477 (OMIM: 605198) PREDICTED: non-canonic ( 533) 3542 433.1 1e-120 XP_016864478 (OMIM: 605198) PREDICTED: non-canonic ( 533) 3542 433.1 1e-120 XP_011512247 (OMIM: 605198) PREDICTED: non-canonic ( 499) 2564 317.2 7.6e-86 NP_001165277 (OMIM: 605198) non-canonical poly(A) ( 362) 2444 302.9 1.1e-81 XP_016864479 (OMIM: 605198) PREDICTED: non-canonic ( 362) 2444 302.9 1.1e-81 XP_011521580 (OMIM: 605540) PREDICTED: non-canonic ( 527) 1648 208.7 3.7e-53 XP_005256150 (OMIM: 605540) PREDICTED: non-canonic ( 673) 1648 208.7 4.6e-53 XP_016879044 (OMIM: 605540) PREDICTED: non-canonic ( 693) 1648 208.7 4.7e-53 NP_001035374 (OMIM: 605540) non-canonical poly(A) ( 698) 1648 208.7 4.8e-53 XP_011521577 (OMIM: 605540) PREDICTED: non-canonic ( 699) 1648 208.7 4.8e-53 XP_005256149 (OMIM: 605540) PREDICTED: non-canonic ( 713) 1648 208.7 4.9e-53 NP_001035375 (OMIM: 605540) non-canonical poly(A) ( 651) 1557 197.9 7.9e-50 XP_011521578 (OMIM: 605540) PREDICTED: non-canonic ( 652) 1557 197.9 7.9e-50 >>NP_008930 (OMIM: 605198) non-canonical poly(A) RNA pol (542 aa) initn: 3609 init1: 3609 opt: 3609 Z-score: 2330.8 bits: 441.0 E(85289): 4.3e-123 Smith-Waterman score: 3609; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:1-542) 10 20 30 40 50 60 pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL 490 500 510 520 530 540 pF1KE6 SR :: NP_008 SR >>XP_005248291 (OMIM: 605198) PREDICTED: non-canonical p (792 aa) initn: 3609 init1: 3609 opt: 3609 Z-score: 2328.3 bits: 441.1 E(85289): 6e-123 Smith-Waterman score: 3609; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:251-792) 10 20 30 pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTAD :::::::::::::::::::::::::::::: XP_005 APRPGTPWKSRAYSPGIQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTAD 230 240 250 260 270 280 40 50 60 70 80 90 pF1KE6 VQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPII 290 300 310 320 330 340 100 110 120 130 140 150 pF1KE6 KLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGG 350 360 370 380 390 400 160 170 180 190 200 210 pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI 410 420 430 440 450 460 220 230 240 250 260 270 pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR 470 480 490 500 510 520 280 290 300 310 320 330 pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT 530 540 550 560 570 580 340 350 360 370 380 390 pF1KE6 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP 590 600 610 620 630 640 400 410 420 430 440 450 pF1KE6 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS 650 660 670 680 690 700 460 470 480 490 500 510 pF1KE6 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP 710 720 730 740 750 760 520 530 540 pF1KE6 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR :::::::::::::::::::::::::::::::: XP_005 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR 770 780 790 >>NP_001165276 (OMIM: 605198) non-canonical poly(A) RNA (541 aa) initn: 3152 init1: 3152 opt: 3590 Z-score: 2318.7 bits: 438.8 E(85289): 2.1e-122 Smith-Waterman score: 3590; 99.8% identity (99.8% similar) in 542 aa overlap (1-542:1-541) 10 20 30 40 50 60 pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : NP_001 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHK-H 430 440 450 460 470 490 500 510 520 530 540 pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL 480 490 500 510 520 530 pF1KE6 SR :: NP_001 SR 540 >>XP_016864477 (OMIM: 605198) PREDICTED: non-canonical p (533 aa) initn: 3542 init1: 3542 opt: 3542 Z-score: 2288.1 bits: 433.1 E(85289): 1e-120 Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 533 aa overlap (10-542:1-533) 10 20 30 40 50 60 pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP ::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS 300 310 320 330 340 350 370 380 390 400 410 420 pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT 360 370 380 390 400 410 430 440 450 460 470 480 pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH 420 430 440 450 460 470 490 500 510 520 530 540 pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL 480 490 500 510 520 530 pF1KE6 SR :: XP_016 SR >>XP_016864478 (OMIM: 605198) PREDICTED: non-canonical p (533 aa) initn: 3542 init1: 3542 opt: 3542 Z-score: 2288.1 bits: 433.1 E(85289): 1e-120 Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 533 aa overlap (10-542:1-533) 10 20 30 40 50 60 pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP ::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS 300 310 320 330 340 350 370 380 390 400 410 420 pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT 360 370 380 390 400 410 430 440 450 460 470 480 pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH 420 430 440 450 460 470 490 500 510 520 530 540 pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL 480 490 500 510 520 530 pF1KE6 SR :: XP_016 SR >>XP_011512247 (OMIM: 605198) PREDICTED: non-canonical p (499 aa) initn: 2557 init1: 2557 opt: 2564 Z-score: 1662.2 bits: 317.2 E(85289): 7.6e-86 Smith-Waterman score: 3251; 92.1% identity (92.1% similar) in 542 aa overlap (1-542:1-499) 10 20 30 40 50 60 pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG :: ::::::::::::::: XP_011 MK-------------------------------------------LHPRIDARRADENLG 130 190 200 210 220 230 240 pF1KE6 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 140 150 160 170 180 190 250 260 270 280 290 300 pF1KE6 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 200 210 220 230 240 250 310 320 330 340 350 360 pF1KE6 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS 260 270 280 290 300 310 370 380 390 400 410 420 pF1KE6 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT 320 330 340 350 360 370 430 440 450 460 470 480 pF1KE6 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH 380 390 400 410 420 430 490 500 510 520 530 540 pF1KE6 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL 440 450 460 470 480 490 pF1KE6 SR :: XP_011 SR >>NP_001165277 (OMIM: 605198) non-canonical poly(A) RNA (362 aa) initn: 2444 init1: 2444 opt: 2444 Z-score: 1587.5 bits: 302.9 E(85289): 1.1e-81 Smith-Waterman score: 2444; 100.0% identity (100.0% similar) in 362 aa overlap (181-542:1-362) 160 170 180 190 200 210 pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI :::::::::::::::::::::::::::::: NP_001 MLLVEFFELYGRNFNYLKTGIRIKEGGAYI 10 20 30 220 230 240 250 260 270 pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT 100 110 120 130 140 150 340 350 360 370 380 390 pF1KE6 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP 160 170 180 190 200 210 400 410 420 430 440 450 pF1KE6 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS 220 230 240 250 260 270 460 470 480 490 500 510 pF1KE6 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP 280 290 300 310 320 330 520 530 540 pF1KE6 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR :::::::::::::::::::::::::::::::: NP_001 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR 340 350 360 >>XP_016864479 (OMIM: 605198) PREDICTED: non-canonical p (362 aa) initn: 2444 init1: 2444 opt: 2444 Z-score: 1587.5 bits: 302.9 E(85289): 1.1e-81 Smith-Waterman score: 2444; 100.0% identity (100.0% similar) in 362 aa overlap (181-542:1-362) 160 170 180 190 200 210 pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI :::::::::::::::::::::::::::::: XP_016 MLLVEFFELYGRNFNYLKTGIRIKEGGAYI 10 20 30 220 230 240 250 260 270 pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQT 100 110 120 130 140 150 340 350 360 370 380 390 pF1KE6 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAP 160 170 180 190 200 210 400 410 420 430 440 450 pF1KE6 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS 220 230 240 250 260 270 460 470 480 490 500 510 pF1KE6 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPP 280 290 300 310 320 330 520 530 540 pF1KE6 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR :::::::::::::::::::::::::::::::: XP_016 VGNRGHHQYNRTGWRRKKHTHTRDSLPVSLSR 340 350 360 >>XP_011521580 (OMIM: 605540) PREDICTED: non-canonical p (527 aa) initn: 1666 init1: 1554 opt: 1648 Z-score: 1075.2 bits: 208.7 E(85289): 3.7e-53 Smith-Waterman score: 1648; 66.1% identity (84.5% similar) in 386 aa overlap (1-380:39-424) 10 20 30 pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTAD ::: ::: :: :::.:::.:.:.:::.:: XP_011 PGKPRRRSRARLRSSRTPSLHEEISDFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSAD 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 VQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPII :::::::.::::::::::::::::::: :: ::.:::::.::. :.::::::::::: XP_011 VQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPII 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 KLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGG ::::. ::::::::::...:::::..::.. ::: .::::.::::::::::::::::::: XP_011 KLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGG 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI :.::::.:::.:::::::: :: . : :.::.::::::::.:::::::::::.::.:. XP_011 IGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYV 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR ::.:..: : .::::::: ::::: :::::::::::::::::.:::::.::::::::.:. XP_011 AKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAK 250 260 270 280 290 300 280 290 300 310 320 pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSR----IKIKERIATCN ::: ..:: :::::.::.:: :: ::...:: : .: :. .. : ... :: XP_011 YYPNNETESILGRIIRVTDEVATYRDWISKQWGLKNRPEPSCNGNGVTLIVDTQQLDKCN 310 320 330 340 350 360 330 340 350 360 370 380 pF1KE6 GEQTQNREPESPYGQRLTLSLSSPQLLSSGS--SASSVSSLSGSDVDSDTPPCTTPSVYQ .. ... : . .. . :::. . ::.. :.::... :.::::::. :: :: XP_011 NNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLL 370 380 390 400 410 420 390 400 410 420 430 440 pF1KE6 FSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAG XP_011 CRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQGTTQ 430 440 450 460 470 480 >>XP_005256150 (OMIM: 605540) PREDICTED: non-canonical p (673 aa) initn: 1642 init1: 1554 opt: 1648 Z-score: 1073.6 bits: 208.7 E(85289): 4.6e-53 Smith-Waterman score: 1648; 66.1% identity (84.5% similar) in 386 aa overlap (1-380:211-596) 10 20 30 pF1KE6 MSPCPEEAAMRREVVKRIETVVKDLWPTAD ::: ::: :: :::.:::.:.:.:::.:: XP_005 VVYSGTPWKRRNYNQGVVGLHEEISDFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSAD 190 200 210 220 230 240 40 50 60 70 80 90 pF1KE6 VQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPII :::::::.::::::::::::::::::: :: ::.:::::.::. :.::::::::::: XP_005 VQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPII 250 260 270 280 290 300 100 110 120 130 140 150 pF1KE6 KLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGG ::::. ::::::::::...:::::..::.. ::: .::::.::::::::::::::::::: XP_005 KLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGG 310 320 330 340 350 360 160 170 180 190 200 210 pF1KE6 ISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI :.::::.:::.:::::::: :: . : :.::.::::::::.:::::::::::.::.:. XP_005 IGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYV 370 380 390 400 410 420 220 230 240 250 260 270 pF1KE6 AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLAR ::.:..: : .::::::: ::::: :::::::::::::::::.:::::.::::::::.:. XP_005 AKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAK 430 440 450 460 470 480 280 290 300 310 320 pF1KE6 SYPNRDAESTLGRIIKVTQEVIDYRRWIKEKWGSKAHPSPGMDSR----IKIKERIATCN ::: ..:: :::::.::.:: :: ::...:: : .: :. .. : ... :: XP_005 YYPNNETESILGRIIRVTDEVATYRDWISKQWGLKNRPEPSCNGNGVTLIVDTQQLDKCN 490 500 510 520 530 540 330 340 350 360 370 380 pF1KE6 GEQTQNREPESPYGQRLTLSLSSPQLLSSGS--SASSVSSLSGSDVDSDTPPCTTPSVYQ .. ... : . .. . :::. . ::.. :.::... :.::::::. :: :: XP_005 NNLSEENEALGKCRSKTSESLSKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLL 550 560 570 580 590 600 390 400 410 420 430 440 pF1KE6 FSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAG XP_005 CRPSTGNRVGSQDVSLESSQAVGKMQSTQTTNTSNSTNKSQHGSARLFRSSSKGFQALSS 610 620 630 640 650 660 542 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:00:14 2016 done: Tue Nov 8 16:00:15 2016 Total Scan time: 9.300 Total Display time: 0.080 Function used was FASTA [36.3.4 Apr, 2011]