FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3064, 219 aa 1>>>pF1KE3064 219 - 219 aa - 219 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2552+/-0.000288; mu= 16.2763+/- 0.018 mean_var=80.0215+/-15.846, 0's: 0 Z-trim(119.6): 16 B-trim: 350 in 1/53 Lambda= 0.143374 statistics sampled from 33877 (33893) to 33877 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.397), width: 16 Scan time: 6.390 The best scores are: opt bits E(85289) XP_005248294 (OMIM: 608773) PREDICTED: tubulin pol ( 219) 1430 304.3 1e-82 NP_008961 (OMIM: 608773) tubulin polymerization-pr ( 219) 1430 304.3 1e-82 XP_016864483 (OMIM: 608773) PREDICTED: tubulin pol ( 219) 1430 304.3 1e-82 XP_016864482 (OMIM: 608773) PREDICTED: tubulin pol ( 286) 1430 304.4 1.3e-82 NP_057224 (OMIM: 616957) tubulin polymerization-pr ( 176) 777 169.1 4e-42 NP_057048 (OMIM: 616957) tubulin polymerization-pr ( 176) 777 169.1 4e-42 XP_016876455 (OMIM: 616956) PREDICTED: tubulin pol ( 170) 683 149.7 2.8e-36 NP_776245 (OMIM: 616956) tubulin polymerization-pr ( 170) 683 149.7 2.8e-36 XP_005267381 (OMIM: 616956) PREDICTED: tubulin pol ( 170) 683 149.7 2.8e-36 XP_011534718 (OMIM: 616956) PREDICTED: tubulin pol ( 157) 435 98.3 7.3e-21 XP_011534722 (OMIM: 616956) PREDICTED: tubulin pol ( 124) 413 93.7 1.4e-19 XP_011534719 (OMIM: 616956) PREDICTED: tubulin pol ( 124) 413 93.7 1.4e-19 XP_011534720 (OMIM: 616956) PREDICTED: tubulin pol ( 124) 413 93.7 1.4e-19 >>XP_005248294 (OMIM: 608773) PREDICTED: tubulin polymer (219 aa) initn: 1430 init1: 1430 opt: 1430 Z-score: 1605.9 bits: 304.3 E(85289): 1e-82 Smith-Waterman score: 1430; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219) 10 20 30 40 50 60 pF1KE3 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF 130 140 150 160 170 180 190 200 210 pF1KE3 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK ::::::::::::::::::::::::::::::::::::::: XP_005 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK 190 200 210 >>NP_008961 (OMIM: 608773) tubulin polymerization-promot (219 aa) initn: 1430 init1: 1430 opt: 1430 Z-score: 1605.9 bits: 304.3 E(85289): 1e-82 Smith-Waterman score: 1430; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219) 10 20 30 40 50 60 pF1KE3 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF 130 140 150 160 170 180 190 200 210 pF1KE3 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK ::::::::::::::::::::::::::::::::::::::: NP_008 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK 190 200 210 >>XP_016864483 (OMIM: 608773) PREDICTED: tubulin polymer (219 aa) initn: 1430 init1: 1430 opt: 1430 Z-score: 1605.9 bits: 304.3 E(85289): 1e-82 Smith-Waterman score: 1430; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219) 10 20 30 40 50 60 pF1KE3 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF 130 140 150 160 170 180 190 200 210 pF1KE3 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK ::::::::::::::::::::::::::::::::::::::: XP_016 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK 190 200 210 >>XP_016864482 (OMIM: 608773) PREDICTED: tubulin polymer (286 aa) initn: 1430 init1: 1430 opt: 1430 Z-score: 1604.3 bits: 304.4 E(85289): 1.3e-82 Smith-Waterman score: 1430; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:68-286) 10 20 30 pF1KE3 MADKAKPAKAANRTPPKSPGDPSKDRAAKR :::::::::::::::::::::::::::::: XP_016 HAAQPPPGSCPCILRWVGICIFGAFQGKGNMADKAKPAKAANRTPPKSPGDPSKDRAAKR 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE3 LSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRN 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE3 VTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLIEGKAPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLIEGKAPI 160 170 180 190 200 210 160 170 180 190 200 210 pF1KE3 ISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGRVDLVDESGYVSGYKHAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGRVDLVDESGYVSGYKHAGT 220 230 240 250 260 270 pF1KE3 YDQKVQGGK ::::::::: XP_016 YDQKVQGGK 280 >>NP_057224 (OMIM: 616957) tubulin polymerization-promot (176 aa) initn: 798 init1: 777 opt: 777 Z-score: 877.2 bits: 169.1 E(85289): 4e-42 Smith-Waterman score: 777; 64.9% identity (87.4% similar) in 174 aa overlap (43-216:2-175) 20 30 40 50 60 70 pF1KE3 RTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMH ::: ....:::.::.::.::: .:.:.::. NP_057 MAASTDMAGLEESFRKFAIHGDPKASGQEMN 10 20 30 80 90 100 110 120 130 pF1KE3 GKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKS ::::.::::::.: ::..:: :::::::::.:::: :.:..:.:..:::::: :::: :: NP_057 GKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVINYEEFKKALEELATKRFKGKS 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 SEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGR .::: . .:. :: : ::::: .. .:.:::::...::::::::: :::::: ::: NP_057 KEEAFDAICQLVAGKEPANVGVTKAKTGGAVDRLTDTSRYTGSHKERFDESGKGKGIAGR 100 110 120 130 140 150 200 210 pF1KE3 VDLVDESGYVSGYKHAGTYDQKVQGGK :..:.:::::.::.::::: ::. NP_057 QDILDDSGYVSAYKNAGTYDAKVKK 160 170 >>NP_057048 (OMIM: 616957) tubulin polymerization-promot (176 aa) initn: 798 init1: 777 opt: 777 Z-score: 877.2 bits: 169.1 E(85289): 4e-42 Smith-Waterman score: 777; 64.9% identity (87.4% similar) in 174 aa overlap (43-216:2-175) 20 30 40 50 60 70 pF1KE3 RTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMH ::: ....:::.::.::.::: .:.:.::. NP_057 MAASTDMAGLEESFRKFAIHGDPKASGQEMN 10 20 30 80 90 100 110 120 130 pF1KE3 GKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKS ::::.::::::.: ::..:: :::::::::.:::: :.:..:.:..:::::: :::: :: NP_057 GKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVINYEEFKKALEELATKRFKGKS 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 SEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGR .::: . .:. :: : ::::: .. .:.:::::...::::::::: :::::: ::: NP_057 KEEAFDAICQLVAGKEPANVGVTKAKTGGAVDRLTDTSRYTGSHKERFDESGKGKGIAGR 100 110 120 130 140 150 200 210 pF1KE3 VDLVDESGYVSGYKHAGTYDQKVQGGK :..:.:::::.::.::::: ::. NP_057 QDILDDSGYVSAYKNAGTYDAKVKK 160 170 >>XP_016876455 (OMIM: 616956) PREDICTED: tubulin polymer (170 aa) initn: 710 init1: 666 opt: 683 Z-score: 772.3 bits: 149.7 E(85289): 2.8e-36 Smith-Waterman score: 683; 58.3% identity (87.5% similar) in 168 aa overlap (49-216:3-170) 20 30 40 50 60 70 pF1KE3 PGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMHGKNWSK : :..:.:::. :.. ..: ::..::.:: XP_016 MASEAEKTFHRFAAFGESSSSGTEMNNKNFSK 10 20 30 80 90 100 110 120 130 pF1KE3 LCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVR ::::: ..::..:: :::::::::.:.:. :::::.::.::..::..:::: :: .:... XP_016 LCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLE 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 EVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGRVDLVDE ... :.::: : .:.::: . .:.:::::.:.::.:::::: :::::: ::: ...:. XP_016 NIYGLMEGKDPATTGATKATTVGAVDRLTDTSKYTGTHKERFDESGKGKGIAGREEMTDN 100 110 120 130 140 150 200 210 pF1KE3 SGYVSGYKHAGTYDQKVQGGK .::::::: .::::.:.. XP_016 TGYVSGYKGSGTYDKKTK 160 170 >>NP_776245 (OMIM: 616956) tubulin polymerization-promot (170 aa) initn: 710 init1: 666 opt: 683 Z-score: 772.3 bits: 149.7 E(85289): 2.8e-36 Smith-Waterman score: 683; 58.3% identity (87.5% similar) in 168 aa overlap (49-216:3-170) 20 30 40 50 60 70 pF1KE3 PGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMHGKNWSK : :..:.:::. :.. ..: ::..::.:: NP_776 MASEAEKTFHRFAAFGESSSSGTEMNNKNFSK 10 20 30 80 90 100 110 120 130 pF1KE3 LCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVR ::::: ..::..:: :::::::::.:.:. :::::.::.::..::..:::: :: .:... NP_776 LCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLE 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 EVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGRVDLVDE ... :.::: : .:.::: . .:.:::::.:.::.:::::: :::::: ::: ...:. NP_776 NIYGLMEGKDPATTGATKATTVGAVDRLTDTSKYTGTHKERFDESGKGKGIAGREEMTDN 100 110 120 130 140 150 200 210 pF1KE3 SGYVSGYKHAGTYDQKVQGGK .::::::: .::::.:.. NP_776 TGYVSGYKGSGTYDKKTK 160 170 >>XP_005267381 (OMIM: 616956) PREDICTED: tubulin polymer (170 aa) initn: 710 init1: 666 opt: 683 Z-score: 772.3 bits: 149.7 E(85289): 2.8e-36 Smith-Waterman score: 683; 58.3% identity (87.5% similar) in 168 aa overlap (49-216:3-170) 20 30 40 50 60 70 pF1KE3 PGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMHGKNWSK : :..:.:::. :.. ..: ::..::.:: XP_005 MASEAEKTFHRFAAFGESSSSGTEMNNKNFSK 10 20 30 80 90 100 110 120 130 pF1KE3 LCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVR ::::: ..::..:: :::::::::.:.:. :::::.::.::..::..:::: :: .:... XP_005 LCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLE 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 EVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGRVDLVDE ... :.::: : .:.::: . .:.:::::.:.::.:::::: :::::: ::: ...:. XP_005 NIYGLMEGKDPATTGATKATTVGAVDRLTDTSKYTGTHKERFDESGKGKGIAGREEMTDN 100 110 120 130 140 150 200 210 pF1KE3 SGYVSGYKHAGTYDQKVQGGK .::::::: .::::.:.. XP_005 TGYVSGYKGSGTYDKKTK 160 170 >>XP_011534718 (OMIM: 616956) PREDICTED: tubulin polymer (157 aa) initn: 421 init1: 421 opt: 435 Z-score: 495.6 bits: 98.3 E(85289): 7.3e-21 Smith-Waterman score: 435; 47.5% identity (78.7% similar) in 141 aa overlap (49-182:3-143) 20 30 40 50 60 70 pF1KE3 PGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMHGKNWSK : :..:.:::. :.. ..: ::..::.:: XP_011 MASEAEKTFHRFAAFGESSSSGTEMNNKNFSK 10 20 30 80 90 100 110 120 130 pF1KE3 LCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVR ::::: ..::..:: :::::::::.:.:. :::::.::.::..::..:::: :: .:... XP_011 LCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLE 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 EVHRLIEGKAPIISGVTKAISS-------PTVSRLTDTTKFTGSHKERFDPSGKGKGKAG ... :.::: : .:.: .:: :: ::... .. .... :: XP_011 NIYGLMEGKDPATTGATWMLSSRLDSTHTPTPVRLNSNISLIQLQEKKCDPFFRLKVCNS 100 110 120 130 140 150 200 210 pF1KE3 RVDLVDESGYVSGYKHAGTYDQKVQGGK XP_011 LFLIG 219 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:52:20 2016 done: Sun Nov 6 04:52:21 2016 Total Scan time: 6.390 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]