FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3064, 219 aa 1>>>pF1KE3064 219 - 219 aa - 219 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5719+/-0.000666; mu= 14.3059+/- 0.041 mean_var=81.2220+/-15.975, 0's: 0 Z-trim(112.2): 10 B-trim: 219 in 1/50 Lambda= 0.142311 statistics sampled from 12980 (12985) to 12980 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.399), width: 16 Scan time: 2.350 The best scores are: opt bits E(32554) CCDS3856.1 TPPP gene_id:11076|Hs108|chr5 ( 219) 1430 302.2 1.7e-82 CCDS10835.1 TPPP3 gene_id:51673|Hs108|chr16 ( 176) 777 168.1 3.2e-42 CCDS9566.1 TPPP2 gene_id:122664|Hs108|chr14 ( 170) 683 148.8 2e-36 >>CCDS3856.1 TPPP gene_id:11076|Hs108|chr5 (219 aa) initn: 1430 init1: 1430 opt: 1430 Z-score: 1594.7 bits: 302.2 E(32554): 1.7e-82 Smith-Waterman score: 1430; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219) 10 20 30 40 50 60 pF1KE3 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF 130 140 150 160 170 180 190 200 210 pF1KE3 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK ::::::::::::::::::::::::::::::::::::::: CCDS38 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK 190 200 210 >>CCDS10835.1 TPPP3 gene_id:51673|Hs108|chr16 (176 aa) initn: 798 init1: 777 opt: 777 Z-score: 871.5 bits: 168.1 E(32554): 3.2e-42 Smith-Waterman score: 777; 64.9% identity (87.4% similar) in 174 aa overlap (43-216:2-175) 20 30 40 50 60 70 pF1KE3 RTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMH ::: ....:::.::.::.::: .:.:.::. CCDS10 MAASTDMAGLEESFRKFAIHGDPKASGQEMN 10 20 30 80 90 100 110 120 130 pF1KE3 GKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKS ::::.::::::.: ::..:: :::::::::.:::: :.:..:.:..:::::: :::: :: CCDS10 GKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVINYEEFKKALEELATKRFKGKS 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 SEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGR .::: . .:. :: : ::::: .. .:.:::::...::::::::: :::::: ::: CCDS10 KEEAFDAICQLVAGKEPANVGVTKAKTGGAVDRLTDTSRYTGSHKERFDESGKGKGIAGR 100 110 120 130 140 150 200 210 pF1KE3 VDLVDESGYVSGYKHAGTYDQKVQGGK :..:.:::::.::.::::: ::. CCDS10 QDILDDSGYVSAYKNAGTYDAKVKK 160 170 >>CCDS9566.1 TPPP2 gene_id:122664|Hs108|chr14 (170 aa) initn: 710 init1: 666 opt: 683 Z-score: 767.4 bits: 148.8 E(32554): 2e-36 Smith-Waterman score: 683; 58.3% identity (87.5% similar) in 168 aa overlap (49-216:3-170) 20 30 40 50 60 70 pF1KE3 PGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMHGKNWSK : :..:.:::. :.. ..: ::..::.:: CCDS95 MASEAEKTFHRFAAFGESSSSGTEMNNKNFSK 10 20 30 80 90 100 110 120 130 pF1KE3 LCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVR ::::: ..::..:: :::::::::.:.:. :::::.::.::..::..:::: :: .:... CCDS95 LCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLE 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 EVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGRVDLVDE ... :.::: : .:.::: . .:.:::::.:.::.:::::: :::::: ::: ...:. CCDS95 NIYGLMEGKDPATTGATKATTVGAVDRLTDTSKYTGTHKERFDESGKGKGIAGREEMTDN 100 110 120 130 140 150 200 210 pF1KE3 SGYVSGYKHAGTYDQKVQGGK .::::::: .::::.:.. CCDS95 TGYVSGYKGSGTYDKKTK 160 170 219 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:52:19 2016 done: Sun Nov 6 04:52:20 2016 Total Scan time: 2.350 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]