(Circular) (Six-base) MAPSORT of: pFN21AE3986.seq Check: 6812 from: 1 to: 5662 pFN21AE3986 5662 bp With 182 enzymes: SgfI * March 28, 2012 11:57 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3472 278 Size: 53 83 186 936 1936 2468 Fragments arranged by size: 2468 1936 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3005 1937 Size: 1068 4594 Acc65I G'GTAC_C Cuts at: 2983 2983 Size: 5662 AclI AA'CG_TT Cuts at: 1563 3789 4162 1563 Size: 2226 373 3063 Fragments arranged by size: 3063 2226 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2697 3725 5109 5377 1632 Size: 1065 1028 1384 268 1917 Fragments arranged by size: 1917 1384 1065 1028 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5465 AflIII A'CryG_T Cuts at: 1203 4561 5538 1203 Size: 3358 977 1327 Fragments arranged by size: 3358 1327 977 AgeI A'CCGG_T Cuts at: 4493 4493 Size: 5662 AhdI GACnn_n'nnGTC Cuts at: 4391 4391 Size: 5662 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5662 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2322 1184 Size: 1138 4524 AlwNI CAG_nnn'CTG Cuts at: 2044 3405 4977 2044 Size: 1361 1572 2729 Fragments arranged by size: 2729 1572 1361 ApaLI G'TGCA_C Cuts at: 3719 4875 3719 Size: 1156 4506 ApoI r'AATT_y Cuts at: 1493 2651 2864 2971 3197 3349 5458 1493 Size: 1158 213 107 226 152 2109 1697 Fragments arranged by size: 2109 1697 1158 226 213 152 107 AseI AT'TA_AT Cuts at: 160 1032 2211 4216 160 Size: 872 1179 2005 1606 Fragments arranged by size: 2005 1606 1179 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5662 AvaI C'yCGr_G Cuts at: 1870 1943 2987 1870 Size: 73 1044 4545 Fragments arranged by size: 4545 1044 73 BamHI G'GATC_C Cuts at: 2992 3359 2992 Size: 367 5295 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2983 4438 618 Size: 325 217 627 1196 1455 1842 Fragments arranged by size: 1842 1455 1196 627 325 217 BanII G_rGCy'C Cuts at: 1391 2981 1391 Size: 1590 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4691 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2169 2203 3853 3887 1903 Size: 34 232 34 1650 34 3678 Fragments arranged by size: 3678 1650 232 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2498 3554 4764 2498 Size: 1056 1210 3396 Fragments arranged by size: 3396 1210 1056 BclI T'GATC_A Cuts at: 1548 1548 Size: 5662 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4273 136 Size: 107 122 71 631 605 2601 1525 Fragments arranged by size: 2601 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5657 5657 Size: 5662 BlpI GC'TnA_GC Cuts at: 2237 3079 2237 Size: 842 4820 Bme1580I G_kGCm'C Cuts at: 1790 3723 4879 1790 Size: 1933 1156 2573 Fragments arranged by size: 2573 1933 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5662 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3393 4351 442 Size: 416 53 83 399 24 1976 958 1753 Fragments arranged by size: 1976 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5662 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4322 1239 Size: 3083 2579 Bpu10I CC'TnA_GC Cuts at: 2232 2232 Size: 5662 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3787 4652 4950 3787 Size: 865 298 4499 Fragments arranged by size: 4499 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4325 882 Size: 617 2826 2219 Fragments arranged by size: 2826 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3453 493 Size: 711 2249 2702 Fragments arranged by size: 2702 2249 711 BsaBI GATnn'nnATC Cuts at: 5656 5656 Size: 5662 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3469 3851 4486 275 Size: 53 83 186 936 1936 382 635 1451 Fragments arranged by size: 1936 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4095 4493 4767 4914 5325 4095 Size: 398 274 147 411 4432 Fragments arranged by size: 4432 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5437 Fragments arranged by size: 5437 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5662 BseYI C'CCAG_C Cuts at: 4865 5361 4865 Size: 496 5166 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5089 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3112 3873 4901 1540 Size: 275 186 1111 761 1028 2301 Fragments arranged by size: 2301 1111 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3723 3808 4879 3723 Size: 85 1071 4506 Fragments arranged by size: 4506 1071 85 BsmI GAATG_Cn' Cuts at: 2269 3173 3266 2269 Size: 904 93 4665 Fragments arranged by size: 4665 904 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2981 3723 3808 4879 1391 Size: 399 1191 742 85 1071 2174 Fragments arranged by size: 2174 1191 1071 742 399 85 BspEI T'CCGG_A Cuts at: 5325 5325 Size: 5662 BspHI T'CATG_A Cuts at: 3551 5281 3551 Size: 1730 3932 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3017 844 Size: 2173 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3549 1394 Size: 429 1726 3507 Fragments arranged by size: 3507 1726 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2606 4157 4331 65 Size: 1183 1358 1551 174 1396 Fragments arranged by size: 1551 1396 1358 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4306 4493 1700 Size: 110 2496 187 2869 Fragments arranged by size: 2869 2496 187 110 BsrGI T'GTAC_A Cuts at: 96 2531 96 Size: 2435 3227 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5662 BssSI C'ACGA_G Cuts at: 3722 4734 3722 Size: 1012 4650 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5662 BstBI TT'CG_AA Cuts at: 2872 4466 2872 Size: 1594 4068 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5662 BstYI r'GATC_y Cuts at: 1972 2992 3359 3744 3761 5213 5299 5311 5657 Size: 1020 367 385 17 1452 86 12 346 Cuts at: 5657 1972 Size: 1977 Fragments arranged by size: 1977 1452 1020 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 4171 Fragments arranged by size: 4171 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4923 Fragments arranged by size: 4923 683 56 BtsI GCAGTG_nn' Cuts at: 3178 3972 3992 3178 Size: 794 20 4848 Fragments arranged by size: 4848 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5662 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2000 2035 529 Size: 35 1436 35 4156 Fragments arranged by size: 4156 1436 35 35 DraI TTT'AAA Cuts at: 2966 2966 Size: 5662 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4669 809 Size: 507 3353 1802 Fragments arranged by size: 3353 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2947 3109 3998 Size: 54 1425 50 275 18 1117 162 889 Cuts at: 3998 5627 8 Size: 1629 43 Fragments arranged by size: 1629 1425 1117 889 275 162 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3109 1537 Size: 275 1297 4090 Fragments arranged by size: 4090 1297 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2673 3592 1353 Size: 1320 919 3423 Fragments arranged by size: 3423 1320 919 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4249 4623 4769 387 Size: 1064 138 2660 374 146 1280 Fragments arranged by size: 2660 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2697 3725 4322 5109 5377 1239 Size: 393 1065 1028 597 787 268 1524 Fragments arranged by size: 1524 1065 1028 787 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2302 2302 Size: 5662 EcoRI G'AATT_C Cuts at: 2971 3349 2971 Size: 378 5284 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2542 2542 Size: 5662 FspI TGC'GCA Cuts at: 4168 4168 Size: 5662 HaeII r_GCGC'y Cuts at: 1678 4809 1678 Size: 3131 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2551 2583 4303 4335 4377 Size: 32 135 32 979 32 1720 32 42 Cuts at: 4377 4409 1373 Size: 32 2626 Fragments arranged by size: 2626 1720 979 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3006 3252 669 Size: 988 281 1068 246 3079 Fragments arranged by size: 3079 1068 988 281 246 HindIII A'AGCT_T Cuts at: 748 2239 748 Size: 1491 4171 HpaI GTT'AAC Cuts at: 3252 3252 Size: 5662 KpnI G_GTAC'C Cuts at: 2987 2987 Size: 5662 MfeI C'AATT_G Cuts at: 3261 3261 Size: 5662 MluI A'CGCG_T Cuts at: 5538 5538 Size: 5662 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4776 4960 1305 Size: 3471 184 2007 Fragments arranged by size: 3471 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2949 10 Size: 54 1425 343 1117 2723 Fragments arranged by size: 2723 1425 1117 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2667 2925 3620 3979 4138 518 Size: 648 1501 258 695 359 159 2042 Fragments arranged by size: 2042 1501 695 648 359 258 159 MspA1I CmG'CkG Cuts at: 1606 2044 2419 3078 3755 4903 5148 1606 Size: 438 375 659 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 659 438 375 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4171 Fragments arranged by size: 4171 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5662 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5662 NotI GC'GGCC_GC Cuts at: 3109 3109 Size: 5662 NspI r_CATG'y Cuts at: 1132 1229 3020 4565 1132 Size: 97 1791 1545 2229 Fragments arranged by size: 2229 1791 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5662 PciI A'CATG_T Cuts at: 4561 4561 Size: 5662 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5662 PfoI T'CCnGG_A Cuts at: 2490 2490 Size: 5662 PmeI GTTT'AAAC Cuts at: 2966 2966 Size: 5662 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3731 3763 5244 5276 3731 Size: 32 1481 32 4117 Fragments arranged by size: 4117 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2302 2302 Size: 5662 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5662 PsiI TTA'TAA Cuts at: 2708 3232 2708 Size: 524 5138 PstI C_TGCA'G Cuts at: 830 2962 3014 830 Size: 2132 52 3478 Fragments arranged by size: 3478 2132 52 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5662 PvuII CAG'CTG Cuts at: 2044 2419 2044 Size: 375 5287 SalI G'TCGA_C Cuts at: 1936 3004 1936 Size: 1068 4594 SapI GCTCTTCn'nnn_ Cuts at: 2673 2673 Size: 5662 SbfI CC_TGCA'GG Cuts at: 3014 3014 Size: 5662 ScaI AGT'ACT Cuts at: 3910 5622 3910 Size: 1712 3950 SfcI C'TryA_G Cuts at: 826 1045 2059 2958 3010 4145 4826 5017 826 Size: 219 1014 899 52 1135 681 191 1471 Fragments arranged by size: 1471 1135 1014 899 681 219 191 52 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5662 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5662 SmaI CCC'GGG Cuts at: 1872 2989 1872 Size: 1117 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3766 4667 4929 820 Size: 197 926 1823 901 262 1553 Fragments arranged by size: 1823 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3453 493 Size: 2960 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5662 SphI G_CATG'C Cuts at: 1132 3020 1132 Size: 1888 3774 SspI AAT'ATT Cuts at: 5 52 2899 3586 5 Size: 47 2847 687 2081 Fragments arranged by size: 2847 2081 687 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5662 StyI C'CwwG_G Cuts at: 513 1065 2004 2146 2481 3101 513 Size: 552 939 142 335 620 3074 Fragments arranged by size: 3074 939 620 552 335 142 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3689 3706 3859 4044 4489 325 Size: 1255 2109 17 153 185 445 1498 Fragments arranged by size: 2109 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2531 2788 3908 Size: 274 80 33 51 1443 554 257 1120 Cuts at: 3908 5620 96 Size: 1712 138 Fragments arranged by size: 1712 1443 1120 554 274 257 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5622 5654 5622 Size: 32 5630 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5662 XbaI T'CTAG_A Cuts at: 2998 2998 Size: 5662 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2488 2488 Size: 5662 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5662 XmaI C'CCGG_G Cuts at: 1870 2987 1870 Size: 1117 4545 XmnI GAAnn'nnTTC Cuts at: 2655 2868 3791 2655 Size: 213 923 4526 Fragments arranged by size: 4526 923 213 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3470 276 Size: 53 83 186 936 1936 2468 Fragments arranged by size: 2468 1936 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI PspXI PsrI RsrII SacI SacII SanDI SexAI SfiI SfoI SrfI SwaI