FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2401, 367 aa
  1>>>pF1KE2401 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9904+/-0.00103; mu= 7.3180+/- 0.062
 mean_var=301.8767+/-61.283, 0's: 0 Z-trim(114.9): 85  B-trim: 0 in 0/50
 Lambda= 0.073818
 statistics sampled from 15344 (15420) to 15344 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.474), width:  16
 Scan time:  3.400

The best scores are:                                      opt bits E(32554)
CCDS3665.2 CXXC4 gene_id:80319|Hs108|chr4          ( 367) 2526 282.2 5.1e-76


>>CCDS3665.2 CXXC4 gene_id:80319|Hs108|chr4               (367 aa)
 initn: 2526 init1: 2526 opt: 2526  Z-score: 1478.3  bits: 282.2 E(32554): 5.1e-76
Smith-Waterman score: 2526; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KE2 MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 AKIARITTPIFPSSAAAAAAAARIGMSPWNCDNAATAAAATAMLWGSGGGGGGGGGGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 AKIARITTPIFPSSAAAAAAAARIGMSPWNCDNAATAAAATAMLWGSGGGGGGGGGGGGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GGGGGGGGGGGGGGRKSSSAAASSSASSSSAILPAGGGGGGGGGGSRTSMHHRNDSQRLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 GGGGGGGGGGGGGGRKSSSAAASSSASSSSAILPAGGGGGGGGGGSRTSMHHRNDSQRLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 KAGCPPEPSLQMANTNFLSTLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 ALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 AKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 AKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSA
              310       320       330       340       350       360

              
pF1KE2 EAFRWFF
       :::::::
CCDS36 EAFRWFF
              




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:12:22 2016 done: Sun Nov  6 09:12:22 2016
 Total Scan time:  3.400 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]