Result of FASTA (omim) for
pFN21AE2253
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2253, 261 aa
1>>>pF1KE2253 261 - 261 aa - 261 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3824+/-0.000406; mu= 5.5225+/- 0.026
mean_var=128.7856+/-25.800, 0's: 0 Z-trim(115.1): 27 B-trim: 14 in 2/53
Lambda= 0.113016
statistics sampled from 25267 (25290) to 25267 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.297), width: 16
Scan time: 6.840
The best scores are: opt bits E(85289)
NP_057326 (OMIM: 608350) endomucin isoform 1 precu ( 261) 1592 270.6 2e-72
XP_011530326 (OMIM: 608350) PREDICTED: endomucin i ( 261) 1592 270.6 2e-72
XP_016863779 (OMIM: 608350) PREDICTED: endomucin i ( 139) 824 145.2 5.9e-35
NP_001153166 (OMIM: 608350) endomucin isoform 2 pr ( 248) 792 140.2 3.5e-33
>>NP_057326 (OMIM: 608350) endomucin isoform 1 precursor (261 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1421.3 bits: 270.6 E(85289): 2e-72
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KE2 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL
190 200 210 220 230 240
250 260
pF1KE2 LTVKTISHESGEHSAQGKTKN
:::::::::::::::::::::
NP_057 LTVKTISHESGEHSAQGKTKN
250 260
>>XP_011530326 (OMIM: 608350) PREDICTED: endomucin isofo (261 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1421.3 bits: 270.6 E(85289): 2e-72
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KE2 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL
190 200 210 220 230 240
250 260
pF1KE2 LTVKTISHESGEHSAQGKTKN
:::::::::::::::::::::
XP_011 LTVKTISHESGEHSAQGKTKN
250 260
>>XP_016863779 (OMIM: 608350) PREDICTED: endomucin isofo (139 aa)
initn: 824 init1: 824 opt: 824 Z-score: 748.6 bits: 145.2 E(85289): 5.9e-35
Smith-Waterman score: 824; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KE2 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
:::::::::::::::::::
XP_016 SSKPKTETQSSIKTTEIPG
130
>>NP_001153166 (OMIM: 608350) endomucin isoform 2 precur (248 aa)
initn: 780 init1: 780 opt: 792 Z-score: 716.6 bits: 140.2 E(85289): 3.5e-33
Smith-Waterman score: 1475; 94.6% identity (95.0% similar) in 261 aa overlap (1-261:1-248)
10 20 30 40 50 60
pF1KE2 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
:::::. :::::::::::::::::::::::::::::::::::::::::
NP_001 SSKPKS-------------SVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS
130 140 150 160
190 200 210 220 230 240
pF1KE2 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL
170 180 190 200 210 220
250 260
pF1KE2 LTVKTISHESGEHSAQGKTKN
:::::::::::::::::::::
NP_001 LTVKTISHESGEHSAQGKTKN
230 240
261 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:22:36 2016 done: Sun Nov 6 17:22:37 2016
Total Scan time: 6.840 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]