FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2253, 261 aa 1>>>pF1KE2253 261 - 261 aa - 261 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.3344+/-0.000964; mu= 5.2799+/- 0.058 mean_var=107.8067+/-21.118, 0's: 0 Z-trim(107.3): 31 B-trim: 2 in 1/52 Lambda= 0.123524 statistics sampled from 9491 (9505) to 9491 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.292), width: 16 Scan time: 2.170 The best scores are: opt bits E(32554) CCDS3655.1 EMCN gene_id:51705|Hs108|chr4 ( 261) 1592 294.2 6.2e-80 CCDS54782.1 EMCN gene_id:51705|Hs108|chr4 ( 248) 792 151.6 4.9e-37 >>CCDS3655.1 EMCN gene_id:51705|Hs108|chr4 (261 aa) initn: 1592 init1: 1592 opt: 1592 Z-score: 1548.5 bits: 294.2 E(32554): 6.2e-80 Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261) 10 20 30 40 50 60 pF1KE2 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL 190 200 210 220 230 240 250 260 pF1KE2 LTVKTISHESGEHSAQGKTKN ::::::::::::::::::::: CCDS36 LTVKTISHESGEHSAQGKTKN 250 260 >>CCDS54782.1 EMCN gene_id:51705|Hs108|chr4 (248 aa) initn: 780 init1: 780 opt: 792 Z-score: 778.4 bits: 151.6 E(32554): 4.9e-37 Smith-Waterman score: 1475; 94.6% identity (95.0% similar) in 261 aa overlap (1-261:1-248) 10 20 30 40 50 60 pF1KE2 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 PKGTITNELLKMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS :::::. ::::::::::::::::::::::::::::::::::::::::: CCDS54 SSKPKS-------------SVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGGKNAS 130 140 150 160 190 200 210 220 230 240 pF1KE2 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGTPENGNDQPQSDKESVKL 170 180 190 200 210 220 250 260 pF1KE2 LTVKTISHESGEHSAQGKTKN ::::::::::::::::::::: CCDS54 LTVKTISHESGEHSAQGKTKN 230 240 261 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:22:35 2016 done: Sun Nov 6 17:22:36 2016 Total Scan time: 2.170 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]