FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3133, 339 aa 1>>>pF1KE3133 339 - 339 aa - 339 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9097+/-0.000382; mu= 10.9561+/- 0.024 mean_var=143.6743+/-28.863, 0's: 0 Z-trim(117.5): 11 B-trim: 642 in 1/53 Lambda= 0.107000 statistics sampled from 29504 (29514) to 29504 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.346), width: 16 Scan time: 7.870 The best scores are: opt bits E(85289) XP_005263409 (OMIM: 616013,616033) PREDICTED: tRNA ( 339) 2286 364.2 2.3e-100 NP_001128137 (OMIM: 616013,616033) tRNA methyltran ( 339) 2286 364.2 2.3e-100 NP_001128138 (OMIM: 616013,616033) tRNA methyltran ( 339) 2286 364.2 2.3e-100 NP_689505 (OMIM: 616013,616033) tRNA methyltransfe ( 339) 2286 364.2 2.3e-100 XP_006714480 (OMIM: 616013,616033) PREDICTED: tRNA ( 339) 2286 364.2 2.3e-100 NP_060289 (OMIM: 615423,616974) mitochondrial ribo ( 403) 275 53.8 7.5e-07 >>XP_005263409 (OMIM: 616013,616033) PREDICTED: tRNA met (339 aa) initn: 2286 init1: 2286 opt: 2286 Z-score: 1922.7 bits: 364.2 E(85289): 2.3e-100 Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339) 10 20 30 40 50 60 pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG 250 260 270 280 290 300 310 320 330 pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH ::::::::::::::::::::::::::::::::::::::: XP_005 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 310 320 330 >>NP_001128137 (OMIM: 616013,616033) tRNA methyltransfer (339 aa) initn: 2286 init1: 2286 opt: 2286 Z-score: 1922.7 bits: 364.2 E(85289): 2.3e-100 Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339) 10 20 30 40 50 60 pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG 250 260 270 280 290 300 310 320 330 pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH ::::::::::::::::::::::::::::::::::::::: NP_001 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 310 320 330 >>NP_001128138 (OMIM: 616013,616033) tRNA methyltransfer (339 aa) initn: 2286 init1: 2286 opt: 2286 Z-score: 1922.7 bits: 364.2 E(85289): 2.3e-100 Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339) 10 20 30 40 50 60 pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG 250 260 270 280 290 300 310 320 330 pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH ::::::::::::::::::::::::::::::::::::::: NP_001 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 310 320 330 >>NP_689505 (OMIM: 616013,616033) tRNA methyltransferase (339 aa) initn: 2286 init1: 2286 opt: 2286 Z-score: 1922.7 bits: 364.2 E(85289): 2.3e-100 Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339) 10 20 30 40 50 60 pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG 250 260 270 280 290 300 310 320 330 pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH ::::::::::::::::::::::::::::::::::::::: NP_689 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 310 320 330 >>XP_006714480 (OMIM: 616013,616033) PREDICTED: tRNA met (339 aa) initn: 2286 init1: 2286 opt: 2286 Z-score: 1922.7 bits: 364.2 E(85289): 2.3e-100 Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339) 10 20 30 40 50 60 pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG 250 260 270 280 290 300 310 320 330 pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH ::::::::::::::::::::::::::::::::::::::: XP_006 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 310 320 330 >>NP_060289 (OMIM: 615423,616974) mitochondrial ribonucl (403 aa) initn: 184 init1: 152 opt: 275 Z-score: 244.0 bits: 53.8 E(85289): 7.5e-07 Smith-Waterman score: 275; 25.2% identity (62.6% similar) in 246 aa overlap (38-276:140-380) 10 20 30 40 50 60 pF1KE3 AFIETSNVDKKQGINEDQEESQKPRLGEGCEPISK-RQMKKLIKQKQWEEQRELRKQKRK : ..: ::.:: .: :: .... . NP_060 EHITEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETT 110 120 130 140 150 160 70 80 90 100 110 120 pF1KE3 EKRKRKKLERQCQMEPNSD-GHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKKLHKQI :. :.:.. . : : . : .. ... :..: .... : :.... .:. NP_060 EEDKQKNFLFLRLWDRNMDIAMGWKGAQ--AMQFGQPLVFDMAYENYMKRKELQNTVSQL 170 180 190 200 210 220 130 140 150 160 170 180 pF1KE3 QRCYAENRRALHPVQFYLTSH--GGQLKKNMDENDKGWVNWKDIHIKPEHYS--ELIKKE . . ::: . : ..:. . : :.... . . .: . . . : .:. :. NP_060 LESEGWNRRNVDPFHIYFCNLKIDGALHRELVK--RYQEKWDKLLLTSTEKSHVDLFPKD 230 240 250 260 270 280 190 200 210 220 230 240 pF1KE3 DLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKMN ..::::.::::.. . ..:.::::..::.. . : . .:. .. ::: .... . NP_060 SIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWE 290 300 310 320 330 340 250 260 270 280 290 300 pF1KE3 -SRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG . : :.......:.: .. .::::. ..:.:: NP_060 IGNKNLTLDQMIRILLCLKNNGNWQEAL-QFVPKRKHTGFLEISQHSQEFINRLKKAKT 350 360 370 380 390 400 310 320 330 pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH 339 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:23:14 2016 done: Sun Nov 6 17:23:15 2016 Total Scan time: 7.870 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]