FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3133, 339 aa
  1>>>pF1KE3133 339 - 339 aa - 339 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9457+/-0.000947; mu= 10.8689+/- 0.057
 mean_var=148.5750+/-29.134, 0's: 0 Z-trim(109.7): 11  B-trim: 0 in 0/54
 Lambda= 0.105221
 statistics sampled from 11050 (11058) to 11050 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.34), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS3650.1 TRMT10A gene_id:93587|Hs108|chr4        ( 339) 2286 358.4 4.7e-99
CCDS43804.1 TRMT10B gene_id:158234|Hs108|chr9      ( 316)  405 72.9 4.1e-13


>>CCDS3650.1 TRMT10A gene_id:93587|Hs108|chr4             (339 aa)
 initn: 2286 init1: 2286 opt: 2286  Z-score: 1891.7  bits: 358.4 E(32554): 4.7e-99
Smith-Waterman score: 2286; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KE3 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQREL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 RKQKRKEKRKRKKLERQCQMEPNSDGHDRKRVRRDVVHSTLRLIIDCSFDHLMVLKDIKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 LHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 EDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVKM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 NSRKVLAVNHVFEIILEYLETRDWQEAFFTILPQRKGAVPTDKACESASHDNQSVRMEEG
              250       260       270       280       290       300

              310       320       330         
pF1KE3 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
       :::::::::::::::::::::::::::::::::::::::
CCDS36 GSDSDSSEEEYSRNELDSPHEEKQDKENHTESTVNSLPH
              310       320       330         

>>CCDS43804.1 TRMT10B gene_id:158234|Hs108|chr9           (316 aa)
 initn: 448 init1: 173 opt: 405  Z-score: 349.0  bits: 72.9 E(32554): 4.1e-13
Smith-Waterman score: 405; 30.2% identity (62.9% similar) in 275 aa overlap (21-279:41-310)

                         10        20        30        40        50
pF1KE3           MSSEMLPAFIETSNVDKKQGINEDQEESQKPRLGEGCEPISKRQMKKLIK
                                     :. . : ..   :. :     ......  :
CCDS43 KVESPVLQGQEGILEETGEDGLPEGFQLLQIDAEGECQEGEILATGSTAWCSKNVQR--K
               20        30        40        50        60          

               60        70        80         90              100  
pF1KE3 QKQWEEQRELRKQKRKEKRKRKKLERQCQMEPN-SDGHDRKRVR---RDVV----HSTLR
       :..::.    .:.:::....:.: .:    .:.    :... .:   .: .    ::  :
CCDS43 QRHWEKIVAAKKSKRKQEKERRKANR--AENPGICPQHSKRFLRALTKDKLLEAKHSGPR
       70        80        90         100       110       120      

            110       120       130       140         150       160
pF1KE3 LIIDCSFDHLMVLKDIKKLHKQIQRCYAENRRALHPVQFYLT--SHGGQLKKNMDENDKG
       : :: :. : :  :....:  ::.: :. :..: .:  . ::  .  . : ..  . . :
CCDS43 LCIDLSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEECVRMNDG
        130       140       150       160       170       180      

              170       180       190       200       210       220
pF1KE3 WVNWKDIHIKPEHYSELIKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYK
       . ..  . :  :    :.  : :.::: :: . :...: .:.:..:::::.. .: .:..
CCDS43 FSSYL-LDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQKKVTFQ
        190        200       210       220       230       240     

              230       240             250       260       270    
pF1KE3 QASDYGINHAQLPLGNFVKMNSR------KVLAVNHVFEIILEYLETRDWQEAFFTILPQ
       .: .:... :.::. ...  :.       ..::.:.::.:.  ::::..: ::.   . .
CCDS43 KAREYSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALKKGVSS
         250       260       270       280       290       300     

          280       290       300       310       320       330    
pF1KE3 RKGAVPTDKACESASHDNQSVRMEEGGSDSDSSEEEYSRNELDSPHEEKQDKENHTESTV
        :: .                                                       
CCDS43 GKGYILRNSVE                                                 
         310                                                       




339 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:23:13 2016 done: Sun Nov  6 17:23:13 2016
 Total Scan time:  2.790 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]