FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5451, 350 aa 1>>>pF1KE5451 350 - 350 aa - 350 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3593+/-0.000844; mu= 16.7210+/- 0.051 mean_var=75.6037+/-14.712, 0's: 0 Z-trim(107.5): 16 B-trim: 0 in 0/53 Lambda= 0.147504 statistics sampled from 9611 (9616) to 9611 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.295), width: 16 Scan time: 2.400 The best scores are: opt bits E(32554) CCDS3620.1 NUDT9 gene_id:53343|Hs108|chr4 ( 350) 2371 513.8 8.5e-146 CCDS3621.1 NUDT9 gene_id:53343|Hs108|chr4 ( 300) 2059 447.4 7.3e-126 CCDS13710.1 TRPM2 gene_id:7226|Hs108|chr21 (1503) 388 92.3 2.9e-18 CCDS82681.1 TRPM2 gene_id:7226|Hs108|chr21 (1553) 388 92.3 3e-18 >>CCDS3620.1 NUDT9 gene_id:53343|Hs108|chr4 (350 aa) initn: 2371 init1: 2371 opt: 2371 Z-score: 2731.0 bits: 513.8 E(32554): 8.5e-146 Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350) 10 20 30 40 50 60 pF1KE5 MAGRLLGKALAAVSLSLALASVTIRSSRCRGIQAFRNSFSSSWFHLNTNVMSGSNGSKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 MAGRLLGKALAAVSLSLALASVTIRSSRCRGIQAFRNSFSSSWFHLNTNVMSGSNGSKEN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 SHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 SPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 SPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 DSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 DSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 KTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 KTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLML 250 260 270 280 290 300 310 320 330 340 350 pF1KE5 EAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 EAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 310 320 330 340 350 >>CCDS3621.1 NUDT9 gene_id:53343|Hs108|chr4 (300 aa) initn: 2059 init1: 2059 opt: 2059 Z-score: 2373.1 bits: 447.4 E(32554): 7.3e-126 Smith-Waterman score: 2059; 100.0% identity (100.0% similar) in 300 aa overlap (51-350:1-300) 30 40 50 60 70 80 pF1KE5 SVTIRSSRCRGIQAFRNSFSSSWFHLNTNVMSGSNGSKENSHNKARTSPYPGSKVERSQV :::::::::::::::::::::::::::::: CCDS36 MSGSNGSKENSHNKARTSPYPGSKVERSQV 10 20 30 90 100 110 120 130 140 pF1KE5 PNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFNEKDGHVERKSKNGLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 PNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFNEKDGHVERKSKNGLY 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE5 EIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 EIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFV 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE5 AIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 AIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQD 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE5 HLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 HLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKL 220 230 240 250 260 270 330 340 350 pF1KE5 YASHSQFIKLVAEKRDAHWSEDSEADCHAL :::::::::::::::::::::::::::::: CCDS36 YASHSQFIKLVAEKRDAHWSEDSEADCHAL 280 290 300 >>CCDS13710.1 TRPM2 gene_id:7226|Hs108|chr21 (1503 aa) initn: 520 init1: 296 opt: 388 Z-score: 441.4 bits: 92.3 E(32554): 2.9e-18 Smith-Waterman score: 558; 36.6% identity (60.6% similar) in 287 aa overlap (59-339:1236-1503) 30 40 50 60 70 80 pF1KE5 CRGIQAFRNSFSSSWFHLNTNVMSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWL .. : .:: ::. : : :::::: : CCDS13 EADVPTLASQKAAEEPDAEPGGRKKTEEPGDSYHVNARHLLYPNCPVTRFPVPNEKVPWE 1210 1220 1230 1240 1250 1260 90 100 110 120 130 140 pF1KE5 VEWQDYKPVEYTAVSVLAGPRWADPQIS--ESNFSPKFNEKDGHVERKSKNGLYEIENGR .:. : : ::: :. ::. . : . ..: :: .:.: .: : .. : CCDS13 TEFLIYDPPFYTAERKDAAA--MDPMGDTLEPLSTIQYNVVDGLRDRRSFHGPYTVQAGL 1270 1280 1290 1300 1310 1320 150 160 170 180 190 200 pF1KE5 PRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKD : :: ::::: ::: :. .::::. :..:::.:. .: . . :..:. ...: CCDS13 PLNPMGRTGLRGRGSLSCFGPNHTLYPMVTRWRRNEDGAICRKSI--KKMLEVLVVKLPL 1330 1340 1350 1360 1370 1380 210 220 230 240 250 260 pF1KE5 CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYK .::.::: .::: . ::: . .: :. :.: : . .:: CCDS13 SEHWALPGGSREPGEMLPRKLKRILRQEHWPSF-----------ENLLKC----GMEVYK 1390 1400 1410 1420 270 280 290 300 310 320 pF1KE5 GYVDDPRNTDNAWMETEAVNYH--DETGEIMDNLM--LEAGDDAGKVKWVDINDKLKLYA ::.::::::::::.:: ::. : :.. .. : :.: :......: .. .. ::: CCDS13 GYMDDPRNTDNAWIETVAVSVHFQDQNDVELNRLNSNLHACDSGASIRWQVVDRRIPLYA 1430 1440 1450 1460 1470 1480 330 340 350 pF1KE5 SHSQFIKLVAEKRDAHWSEDSEADCHAL .:. ... .: . ::. CCDS13 NHKTLLQKAAAEFGAHY 1490 1500 >>CCDS82681.1 TRPM2 gene_id:7226|Hs108|chr21 (1553 aa) initn: 520 init1: 296 opt: 388 Z-score: 441.2 bits: 92.3 E(32554): 3e-18 Smith-Waterman score: 558; 36.6% identity (60.6% similar) in 287 aa overlap (59-339:1286-1553) 30 40 50 60 70 80 pF1KE5 CRGIQAFRNSFSSSWFHLNTNVMSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWL .. : .:: ::. : : :::::: : CCDS82 EADVPTLASQKAAEEPDAEPGGRKKTEEPGDSYHVNARHLLYPNCPVTRFPVPNEKVPWE 1260 1270 1280 1290 1300 1310 90 100 110 120 130 140 pF1KE5 VEWQDYKPVEYTAVSVLAGPRWADPQIS--ESNFSPKFNEKDGHVERKSKNGLYEIENGR .:. : : ::: :. ::. . : . ..: :: .:.: .: : .. : CCDS82 TEFLIYDPPFYTAERKDAAA--MDPMGDTLEPLSTIQYNVVDGLRDRRSFHGPYTVQAGL 1320 1330 1340 1350 1360 1370 150 160 170 180 190 200 pF1KE5 PRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKD : :: ::::: ::: :. .::::. :..:::.:. .: . . :..:. ...: CCDS82 PLNPMGRTGLRGRGSLSCFGPNHTLYPMVTRWRRNEDGAICRKSI--KKMLEVLVVKLPL 1380 1390 1400 1410 1420 1430 210 220 230 240 250 260 pF1KE5 CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYK .::.::: .::: . ::: . .: :. :.: : . .:: CCDS82 SEHWALPGGSREPGEMLPRKLKRILRQEHWPSF-----------ENLLKC----GMEVYK 1440 1450 1460 1470 270 280 290 300 310 320 pF1KE5 GYVDDPRNTDNAWMETEAVNYH--DETGEIMDNLM--LEAGDDAGKVKWVDINDKLKLYA ::.::::::::::.:: ::. : :.. .. : :.: :......: .. .. ::: CCDS82 GYMDDPRNTDNAWIETVAVSVHFQDQNDVELNRLNSNLHACDSGASIRWQVVDRRIPLYA 1480 1490 1500 1510 1520 1530 330 340 350 pF1KE5 SHSQFIKLVAEKRDAHWSEDSEADCHAL .:. ... .: . ::. CCDS82 NHKTLLQKAAAEFGAHY 1540 1550 350 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:53:47 2016 done: Tue Nov 8 00:53:47 2016 Total Scan time: 2.400 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]