FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3885, 115 aa
  1>>>pF1KE3885     115 - 115 aa - 115 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9502+/-0.000538; mu= 13.9092+/- 0.033
 mean_var=85.2977+/-16.393, 0's: 0 Z-trim(116.4): 26  B-trim: 55 in 1/51
 Lambda= 0.138869
 statistics sampled from 17213 (17238) to 17213 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.516), width:  16
 Scan time:  0.730

The best scores are:                                      opt bits E(33420)
CCDS3601.1 PLAC8 gene_id:51316|Hs109|chr4          ( 115)  879 184.1 1.7e-47
CCDS12606.1 CNFN gene_id:84518|Hs109|chr19         ( 112)  290 66.1 5.5e-12


>>CCDS3601.1 PLAC8 gene_id:51316|Hs109|chr4               (115 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 966.4  bits: 184.1 E(33420): 1.7e-47
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE3 MQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNE
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE3 CCLCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRTF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 CCLCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRTF
               70        80        90       100       110     

>>CCDS12606.1 CNFN gene_id:84518|Hs109|chr19              (112 aa)
 initn: 289 init1: 189 opt: 290  Z-score: 328.8  bits: 66.1 E(33420): 5.5e-12
Smith-Waterman score: 290; 41.1% identity (63.6% similar) in 107 aa overlap (9-109:5-111)

               10        20          30        40        50        
pF1KE3 MQAQAPVVVVTQPGVGPGPAPQN--SNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADM
               :..::  .     :.  :.:.::. :: .:  :::::::   ::.:... :.
CCDS12     MSYPVTSQPQCATTSCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDF
                   10        20        30        40        50      

       60            70        80        90       100       110    
pF1KE3 NECC----LCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRT
       .:::    : :   ..:: .: :: : ::.  :. :   :  :.:::. :... :     
CCDS12 GECCCAPYLPGGLHSIRTGMRERYHIQGSVGHDWAALTFCLPCALCQMARELKIRE    
         60        70        80        90       100       110      

        
pF1KE3 F




115 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Aug  4 20:39:49 2021 done: Wed Aug  4 20:39:49 2021
 Total Scan time:  0.730 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]