FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6524, 130 aa 1>>>pF1KE6524 130 - 130 aa - 130 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5696+/-0.000242; mu= 6.5796+/- 0.015 mean_var=104.4971+/-20.929, 0's: 0 Z-trim(124.9): 4 B-trim: 1067 in 2/53 Lambda= 0.125465 statistics sampled from 47540 (47544) to 47540 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.557), width: 16 Scan time: 4.450 The best scores are: opt bits E(85289) NP_848592 (OMIM: 614829,614832) uncharacterized pr ( 130) 976 185.4 2.2e-47 NP_001244001 (OMIM: 614829,614832) uncharacterized ( 85) 512 101.3 3e-22 NP_001193910 (OMIM: 614829,614832) uncharacterized ( 176) 185 42.3 0.00036 XP_011529970 (OMIM: 614829,614832) PREDICTED: unch ( 176) 185 42.3 0.00036 >>NP_848592 (OMIM: 614829,614832) uncharacterized protei (130 aa) initn: 976 init1: 976 opt: 976 Z-score: 971.6 bits: 185.4 E(85289): 2.2e-47 Smith-Waterman score: 976; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130) 10 20 30 40 50 60 pF1KE6 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_848 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AQPITKTPRCPFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_848 AQPITKTPRCPFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRR 70 80 90 100 110 120 130 pF1KE6 LQRGSSSEES :::::::::: NP_848 LQRGSSSEES 130 >>NP_001244001 (OMIM: 614829,614832) uncharacterized pro (85 aa) initn: 538 init1: 494 opt: 512 Z-score: 520.4 bits: 101.3 E(85289): 3e-22 Smith-Waterman score: 512; 93.6% identity (94.9% similar) in 78 aa overlap (1-78:1-74) 10 20 30 40 50 60 pF1KE6 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AQPITKTPRCPFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRR ::::::::: .:::: NP_001 AQPITKTPR----YFPRRRLQRGSSSEES 70 80 >>NP_001193910 (OMIM: 614829,614832) uncharacterized pro (176 aa) initn: 176 init1: 164 opt: 185 Z-score: 195.9 bits: 42.3 E(85289): 0.00036 Smith-Waterman score: 185; 37.3% identity (55.9% similar) in 102 aa overlap (1-100:1-94) 10 20 30 40 50 60 pF1KE6 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR ::::::::::::::::::::::. . ... : . . : . : NP_001 MARRHCFSYWLLVCWLVVTVAEALSTFYL---QQHINLHMDKKRYLRLLEI----HKIMR 10 20 30 40 50 70 80 90 100 110 pF1KE6 AQPITKTPRCPFHFFPRRPRIHFRFPNR--PFVPSRCNHRFPFQPFYWPHRYLTYRYFPR . : ... . :.:. :: : . :.. : ::: :. : NP_001 TLPTARSLHSPLHL-PRGVRSQGPSPSQRHPGVPSIFFHEGPESILGFQTDLSSLQGVTT 60 70 80 90 100 110 120 130 pF1KE6 RRLQRGSSSEES NP_001 VFHSSHFIGHTVTLLIGISPEEDSREEAHLRKAEREEKPKHTEAKKSLSFRKKQQKDFCF 120 130 140 150 160 170 >>XP_011529970 (OMIM: 614829,614832) PREDICTED: uncharac (176 aa) initn: 176 init1: 164 opt: 185 Z-score: 195.9 bits: 42.3 E(85289): 0.00036 Smith-Waterman score: 185; 37.3% identity (55.9% similar) in 102 aa overlap (1-100:1-94) 10 20 30 40 50 60 pF1KE6 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR ::::::::::::::::::::::. . ... : . . : . : XP_011 MARRHCFSYWLLVCWLVVTVAEALSTFYL---QQHINLHMDKKRYLRLLEI----HKIMR 10 20 30 40 50 70 80 90 100 110 pF1KE6 AQPITKTPRCPFHFFPRRPRIHFRFPNR--PFVPSRCNHRFPFQPFYWPHRYLTYRYFPR . : ... . :.:. :: : . :.. : ::: :. : XP_011 TLPTARSLHSPLHL-PRGVRSQGPSPSQRHPGVPSIFFHEGPESILGFQTDLSSLQGVTT 60 70 80 90 100 110 120 130 pF1KE6 RRLQRGSSSEES XP_011 VFHSSHFIGHTVTLLIGISPEEDSREEAHLRKAEREEKPKHTEAKKSLSFRKKQQKDFCF 120 130 140 150 160 170 130 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:05:22 2016 done: Tue Nov 8 14:05:23 2016 Total Scan time: 4.450 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]