FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3036, 169 aa 1>>>pF1KE3036 169 - 169 aa - 169 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3599+/-0.000813; mu= 12.3927+/- 0.048 mean_var=83.8891+/-16.219, 0's: 0 Z-trim(109.0): 57 B-trim: 14 in 1/49 Lambda= 0.140030 statistics sampled from 10510 (10564) to 10510 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.325), width: 16 Scan time: 1.850 The best scores are: opt bits E(32554) CCDS3564.1 EREG gene_id:2069|Hs108|chr4 ( 169) 1160 243.5 4.5e-65 >>CCDS3564.1 EREG gene_id:2069|Hs108|chr4 (169 aa) initn: 1160 init1: 1160 opt: 1160 Z-score: 1281.7 bits: 243.5 E(32554): 4.5e-65 Smith-Waterman score: 1160; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169) 10 20 30 40 50 60 pF1KE3 MTAGRRMEMLCAGRVPALLLCLGFHLLQAVLSTTVIPSCIPGESSDNCTALVQTEDNPRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 MTAGRRMEMLCAGRVPALLLCLGFHLLQAVLSTTVIPSCIPGESSDNCTALVQTEDNPRV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 AQVSITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHFFLTVHQPLSKEYVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 AQVSITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHFFLTVHQPLSKEYVA 70 80 90 100 110 120 130 140 150 160 pF1KE3 LTVILIILFLITVVGSTYYFCRWYRNRKSKEPKKEYERVTSGDPELPQV ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 LTVILIILFLITVVGSTYYFCRWYRNRKSKEPKKEYERVTSGDPELPQV 130 140 150 160 169 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:52:55 2016 done: Sat Nov 5 22:52:56 2016 Total Scan time: 1.850 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]