FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4104, 473 aa 1>>>pF1KE4104 473 - 473 aa - 473 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6720+/-0.000687; mu= 14.1569+/- 0.042 mean_var=124.8895+/-25.349, 0's: 0 Z-trim(114.1): 28 B-trim: 952 in 2/51 Lambda= 0.114765 statistics sampled from 14682 (14709) to 14682 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.452), width: 16 Scan time: 2.860 The best scores are: opt bits E(32554) CCDS3467.1 KCTD8 gene_id:386617|Hs108|chr4 ( 473) 3165 534.6 8.3e-152 CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5 ( 428) 1144 200.0 4.2e-51 CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13 ( 325) 630 114.8 1.4e-25 >>CCDS3467.1 KCTD8 gene_id:386617|Hs108|chr4 (473 aa) initn: 3165 init1: 3165 opt: 3165 Z-score: 2838.9 bits: 534.6 E(32554): 8.3e-152 Smith-Waterman score: 3165; 100.0% identity (100.0% similar) in 473 aa overlap (1-473:1-473) 10 20 30 40 50 60 pF1KE4 MALKDTGSGGSTILPISEMVSSSSSPGASAAAAPGPCAPSPFPEVVELNVGGQVYVTKHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MALKDTGSGGSTILPISEMVSSSSSPGASAAAAPGPCAPSPFPEVVELNVGGQVYVTKHS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TLLSVPDSTLASMFSPSSPRGGARRRGELPRDSRARFFIDRDGFLFRYVLDYLRDKQLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 TLLSVPDSTLASMFSPSSPRGGARRRGELPRDSRARFFIDRDGFLFRYVLDYLRDKQLAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PEHFPEKERLLREAEYFQLTDLVKLLSPKVTKQNSLNDEGCQSDLEDNVSQGSSDALLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 PEHFPEKERLLREAEYFQLTDLVKLLSPKVTKQNSLNDEGCQSDLEDNVSQGSSDALLLR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 GAAAAVPSGPGAHGGGGGGGAQDKRSGFLTLGYRGSYTTVRDNQADAKFRRVARIMVCGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 GAAAAVPSGPGAHGGGGGGGAQDKRSGFLTLGYRGSYTTVRDNQADAKFRRVARIMVCGR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 IALAKEVFGDTLNESRDPDRQPEKYTSRFYLKFTYLEQAFDRLSEAGFHMVACNSSGTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 IALAKEVFGDTLNESRDPDRQPEKYTSRFYLKFTYLEQAFDRLSEAGFHMVACNSSGTAA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 FVNQYRDDKIWSSYTEYIFFRPPQKIVSPKQEHEDRKHDKVTDKGSESGTSCNELSTSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 FVNQYRDDKIWSSYTEYIFFRPPQKIVSPKQEHEDRKHDKVTDKGSESGTSCNELSTSSC 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 DSHSEASTPQDNPSSAQQATAHQPNTLTLDRPSKKAPVQWIPPPDKRRNSELFQTLISKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 DSHSEASTPQDNPSSAQQATAHQPNTLTLDRPSKKAPVQWIPPPDKRRNSELFQTLISKS 370 380 390 400 410 420 430 440 450 460 470 pF1KE4 RETNLSKKKVCEKLSVEEEMKKCIQDFKKIHIPDYFPERKRQWQSELLQKYGL ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 RETNLSKKKVCEKLSVEEEMKKCIQDFKKIHIPDYFPERKRQWQSELLQKYGL 430 440 450 460 470 >>CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5 (428 aa) initn: 1681 init1: 652 opt: 1144 Z-score: 1031.0 bits: 200.0 E(32554): 4.2e-51 Smith-Waterman score: 1669; 61.7% identity (78.2% similar) in 441 aa overlap (35-473:16-428) 10 20 30 40 50 60 pF1KE4 DTGSGGSTILPISEMVSSSSSPGASAAAAPGPCAPSPFPEVVELNVGGQVYVTKHSTLLS : .:. :::::::::::::: :.::::.: CCDS34 MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLIS 10 20 30 40 70 80 90 100 110 120 pF1KE4 VPDSTLASMFSPSSPRGGARRRGELPRDSRARFFIDRDGFLFRYVLDYLRDKQLALPEHF .: : : .::::. : : ..: .::..:::::::::::::.::::::.:..::.:: CCDS34 IPHSLLWKMFSPK--RDTA---NDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHF 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 PEKERLLREAEYFQLTDLVKLLSPKVTKQNSLNDEGCQSDLEDNVSQGSSDALLLRGAAA ::: :: :::::::: ::::::.: ::. :: :.::.:: .::::. . .. CCDS34 PEKGRLKREAEYFQLPDLVKLLTPDEIKQSP--DEFCHSDFED-ASQGSDTRIC--PPSS 110 120 130 140 150 190 200 210 220 230 240 pF1KE4 AVPSGPGAHGGGGGGGAQDKRSGFLTLGYRGSYTTVRDNQADAKFRRVARIMVCGRIALA .:. :.. ::.:.::::: : :..::::::::: ::.:::::.:: CCDS34 LLPA--------------DRKWGFITVGYRGSCTLGREGQADAKFRRVPRILVCGRISLA 160 170 180 190 200 250 260 270 280 290 300 pF1KE4 KEVFGDTLNESRDPDRQPEKYTSRFYLKFTYLEQAFDRLSEAGFHMVACNSSGTAAFVNQ :::::.:::::::::: ::.::::::::: .::.::: ::: :::::::::: ::.:.:: CCDS34 KEVFGETLNESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVACNSSVTASFINQ 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE4 YRDDKIWSSYTEYIFFRPPQKIVSPKQEHEDRKHDKVTDKGSESGTSCNELSTSSCDSHS : :::::::::::.:.: :.. ::.. :. : :: .:::::::.::::::::.: CCDS34 YTDDKIWSSYTEYVFYREPSRW-SPSHCDCCCKNGK-GDKEGESGTSCNDLSTSSCDSQS 270 280 290 300 310 370 380 390 400 410 420 pF1KE4 EASTPQDNPSSAQQATAHQPNTLTLDRPSKKAPVQWIPPPDKRRNSELFQTLISKSRETN :::.::. . ...: : ::::: ::.::: : . ::.:.:..:: : :::.: CCDS34 EASSPQE--TVICGPVTRQTNIQTLDRPIKKGPVQLIQQSEMRRKSDLLRTLTSGSRESN 320 330 340 350 360 370 430 440 450 460 470 pF1KE4 LSKKK--VCEKLSVEEEMKKCIQDFKKIHIPDYFPERKRQWQSELLQKYGL .:.:: : ::::.:::..:::::: ::.::: :::::. ::::::.:: : CCDS34 MSSKKKAVKEKLSIEEELEKCIQDFLKIKIPDRFPERKHPWQSELLRKYHL 380 390 400 410 420 >>CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13 (325 aa) initn: 894 init1: 540 opt: 630 Z-score: 572.7 bits: 114.8 E(32554): 1.4e-25 Smith-Waterman score: 1056; 51.9% identity (73.8% similar) in 343 aa overlap (1-321:1-324) 10 20 30 40 50 60 pF1KE4 MALKDTGSGGSTILPISEMVSSSSSPGASAAAAPGPCAPSPFPEVVELNVGGQVYVTKHS ::: :. : :: .... :...... . : ::..::::::::::::.. CCDS94 MALADSTRG----LP------NGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRC 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 TLLSVPDSTLASMFSPSSPRGGARRRGELPRDSRARFFIDRDGFLFRYVLDYLRDKQLAL :..::::: : ::. ..:. :: :::..:::.:::::::::.:::::: ::.: CCDS94 TVVSVPDSLLWRMFTQQQPQ-------ELARDSKGRFFLDRDGFLFRYILDYLRDLQLVL 60 70 80 90 100 130 140 150 160 170 pF1KE4 PEHFPEKERLLREAEYFQLTDLVKLL-SPKVT------KQNSLNDEGCQSDLEDNVSQGS :..:::. :: ::::::.: .::. : .:. .. ... :: .: . . : CCDS94 PDYFPERSRLQREAEYFELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGD--ELLPLGY 110 120 130 140 150 160 180 190 200 210 220 pF1KE4 SDALLLRGAAAAVPS-----GPGAHGGGGGGG----AQD----KRSGFLTLGYRGSYTTV :. .::.:..:: . . .::..: .:. .:::..:.::::::: CCDS94 SEPEQQEGASAGAPSPTLELASRSPSGGAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIG 170 180 190 200 210 220 230 240 250 260 270 280 pF1KE4 RDNQADAKFRRVARIMVCGRIALAKEVFGDTLNESRDPDRQPEKYTSRFYLKFTYLEQAF :: :::::::::::: :::. .:::::::::::::::::: ::.::::.::::..::::: CCDS94 RDAQADAKFRRVARITVCGKTSLAKEVFGDTLNESRDPDRPPERYTSRYYLKFNFLEQAF 230 240 250 260 270 280 290 300 310 320 330 pF1KE4 DRLSEAGFHMVACNSSGTAAFVNQ--YRDDKIWSSYTEYIFFRPPQKIVSPKQEHEDRKH :.:::.:::::::.:.:: ::... .::::.:::::.: : CCDS94 DKLSESGFHMVACSSTGTCAFASSTDQSEDKIWTSYTEYVFCRE 290 300 310 320 340 350 360 370 380 390 pF1KE4 DKVTDKGSESGTSCNELSTSSCDSHSEASTPQDNPSSAQQATAHQPNTLTLDRPSKKAPV 473 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:44:07 2016 done: Sun Nov 6 01:44:07 2016 Total Scan time: 2.860 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]