FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1804, 318 aa 1>>>pF1KE1804 318 - 318 aa - 318 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2595+/-0.00076; mu= 16.0174+/- 0.046 mean_var=61.5803+/-11.979, 0's: 0 Z-trim(107.6): 13 B-trim: 7 in 1/48 Lambda= 0.163438 statistics sampled from 9693 (9696) to 9693 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.298), width: 16 Scan time: 2.110 The best scores are: opt bits E(32554) CCDS3416.1 BST1 gene_id:683|Hs108|chr4 ( 318) 2163 518.3 3.1e-147 CCDS3417.1 CD38 gene_id:952|Hs108|chr4 ( 300) 659 163.7 1.7e-40 >>CCDS3416.1 BST1 gene_id:683|Hs108|chr4 (318 aa) initn: 2163 init1: 2163 opt: 2163 Z-score: 2756.8 bits: 518.3 E(32554): 3.1e-147 Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318) 10 20 30 40 50 60 pF1KE1 MAAQGCAASRLLQLLLQLLLLLLLLAAGGARARWRGEGTSAHLRDIFLGRCAEYRALLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MAAQGCAASRLLQLLLQLLLLLLLLAAGGARARWRGEGTSAHLRDIFLGRCAEYRALLSP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EQRNKNCTAIWEAFKVALDKDPCSVLPSDYDLFINLSRHSIPRDKSLFWENSHLLVNSFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 EQRNKNCTAIWEAFKVALDKDPCSVLPSDYDLFINLSRHSIPRDKSLFWENSHLLVNSFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDYQSCPTSEDCENNPVDSFWKRASIQYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 DNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDYQSCPTSEDCENNPVDSFWKRASIQYS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGPNVESCGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 KDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGPNVESCGE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVDHSTHPDCALKSAAAATQRKAPSLYTEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 GSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVDHSTHPDCALKSAAAATQRKAPSLYTEQ 250 260 270 280 290 300 310 pF1KE1 RAGLIIPLFLVLASRTQL :::::::::::::::::: CCDS34 RAGLIIPLFLVLASRTQL 310 >>CCDS3417.1 CD38 gene_id:952|Hs108|chr4 (300 aa) initn: 569 init1: 382 opt: 659 Z-score: 840.6 bits: 163.7 E(32554): 1.7e-40 Smith-Waterman score: 659; 36.8% identity (66.0% similar) in 285 aa overlap (6-280:16-296) 10 20 30 40 pF1KE1 MAAQGCAASRLLQLLLQLLLLLLLLAAGGA------RARWRGEGTSAHLR : :: :: : . .:.:.:.. : : .: : ::. .. CCDS34 MANCEFSPVSGDKPCCRLSRRAQLCLGVSILVLILVVVLAVVVPRWRQQWSGPGTTKRFP 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 DIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYDLFINLSRHSIPR . :.::..: . ::.:. .: ..:.::: : ..: ::.. ::. ...:. ...: CCDS34 ETVLARCVKYTEI-HPEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPC 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 DKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDYQSCPT-SED .: :.: . :...:.. : .. : :.: : .:: :.:: . : : ..::::: .: CCDS34 NKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKD 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE1 CENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRI : ::::. ::: .: .... . :.:::::::. . . .. :.. :. ::: ::. . CCDS34 CSNNPVSVFWKTVSRRFAEAACDVVHVMLNGSR-SKIFDKNSTFGSVEVHNLQPEKVQTL 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE1 EIWVMHEIGG--PNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVDHSTHPDC : ::.: :: . . : . ..: ::. .. ..:.:: : ::: :.:::: . .: CCDS34 EAWVIH--GGREDSRDLCQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSC 240 250 260 270 280 290 290 300 310 pF1KE1 ALKSAAAATQRKAPSLYTEQRAGLIIPLFLVLASRTQL CCDS34 TSEI 300 318 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:32:40 2016 done: Sun Nov 6 17:32:40 2016 Total Scan time: 2.110 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]