FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9437, 363 aa
  1>>>pF1KE9437 363 - 363 aa - 363 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2799+/-0.000781; mu= 16.9170+/- 0.047
 mean_var=102.2343+/-28.990, 0's: 0 Z-trim(108.9): 177  B-trim: 1251 in 2/47
 Lambda= 0.126846
 statistics sampled from 10204 (10489) to 10204 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.322), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS3403.1 GPR78 gene_id:27201|Hs108|chr4          ( 363) 2391 448.2  5e-126
CCDS7636.1 GPR26 gene_id:2849|Hs108|chr10          ( 337) 1105 212.9 3.3e-55
CCDS197.1 HTR6 gene_id:3362|Hs108|chr1             ( 440)  307 67.0 3.6e-11


>>CCDS3403.1 GPR78 gene_id:27201|Hs108|chr4               (363 aa)
 initn: 2391 init1: 2391 opt: 2391  Z-score: 2376.0  bits: 448.2 E(32554): 5e-126
Smith-Waterman score: 2391; 99.7% identity (99.7% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KE9 MGPGEALLAGLLVMVLAVALLSNALVLLCCAYSAELRTRASGVLLVNLSLGHLLLAALDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGPGEALLAGLLVMVLAVALLSNALVLLCCAYSAELRTRASGVLLVNLSLGHLLLAALDM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PFTLLGVMRGRTPSAPGACQVIGFLDTFLASNAALSVAALSADQWLAVGFPLRYAGRLRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PFTLLGVMRGRTPSAPGACQVIGFLDTFLASNAALSVAALSADQWLAVGFPLRYAGRLRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 RYAGLLLGCAWGQSLAFSGAALGCSWLGYSSAFASCSLRLPPEPERPRFAAFTATLHAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RYAGLLLGCAWGQSLAFSGAALGCSWLGYSSAFASCSLRLPPEPERPRFAAFTATLHAVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 FVLPLAVLCLTSLQVHRVARSHCQRMDTVTMKALALLADLHPSVRQRCLIQQKRRRHRAT
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS34 FVLPLAVLCLTSLQVHRVARRHCQRMDTVTMKALALLADLHPSVRQRCLIQQKRRRHRAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 RKIGIAIATFLICFAPYVMTRLAELVPFVTVNAQWGILSKCLTYSKAVADPFTYSLLRRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RKIGIAIATFLICFAPYVMTRLAELVPFVTVNAQWGILSKCLTYSKAVADPFTYSLLRRP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 FRQVLAGMVHRLLKRTPRPASTHDSSLDVAGMVHQLLKRTPRPASTHNGSVDTENDSCLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FRQVLAGMVHRLLKRTPRPASTHDSSLDVAGMVHQLLKRTPRPASTHNGSVDTENDSCLQ
              310       320       330       340       350       360

          
pF1KE9 QTH
       :::
CCDS34 QTH
          

>>CCDS7636.1 GPR26 gene_id:2849|Hs108|chr10               (337 aa)
 initn: 1140 init1: 1094 opt: 1105  Z-score: 1104.6  bits: 212.9 E(32554): 3.3e-55
Smith-Waterman score: 1105; 52.3% identity (81.2% similar) in 329 aa overlap (1-327:1-323)

               10        20        30        40        50        60
pF1KE9 MGPGEALLAGLLVMVLAVALLSNALVLLCCAYSAELRTRASGVLLVNLSLGHLLLAALDM
       :.  .: :::::: ...:.::::::::::  .::..: .: ... .::. :.:: ....:
CCDS76 MNSWDAGLAGLLVGTMGVSLLSNALVLLCLLHSADIRRQAPALFTLNLTCGNLLCTVVNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PFTLLGVMRGRTPSAPGACQVIGFLDTFLASNAALSVAALSADQWLAVGFPLRYAGRLRP
       :.:: ::.  : :..   :.. .:::::::.:. ::.:::: :.:.:: ::: : ...: 
CCDS76 PLTLAGVVAQRQPAGDRLCRLAAFLDTFLAANSMLSMAALSIDRWVAVVFPLSYRAKMRL
               70        80        90       100       110       120

              130       140       150         160       170        
pF1KE9 RYAGLLLGCAWGQSLAFSGAALGCSWLGYSSAFASCSL--RLPPEPERPRFAAFTATLHA
       : :.:... .: ..:.: .:::. ::::. . .:::.:  : : :  : :::.::...::
CCDS76 RDAALMVAYTWLHALTFPAAALALSWLGFHQLYASCTLCSRRPDE--RLRFAVFTGAFHA
              130       140       150       160         170        

      180       190       200       210       220       230        
pF1KE9 VGFVLPLAVLCLTSLQVHRVARSHCQRMDTVTMKALALLADLHPSVRQRCLIQQKRRRHR
       ..:.: ..::: : :.: .::: ::.:.:..::..:.::.:::::::.::: .:::::.:
CCDS76 LSFLLSFVVLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQR
      180       190       200       210       220       230        

      240       250       260       270       280       290        
pF1KE9 ATRKIGIAIATFLICFAPYVMTRLAELVPFVTVNAQWGILSKCLTYSKAVADPFTYSLLR
       ::.::.  :.:::.::::::.:::.::   : ....::.:::::.::::..:::.:::::
CCDS76 ATKKISTFIGTFLVCFAPYVITRLVELFSTVPIGSHWGVLSKCLAYSKAASDPFVYSLLR
      240       250       260       270       280       290        

      300       310       320       330       340       350        
pF1KE9 RPFRQVLAGMVHRLLKRTPRPASTHDSSLDVAGMVHQLLKRTPRPASTHNGSVDTENDSC
       . .:.    ...:::.:     : :.:.:                               
CCDS76 HQYRKSCKEILNRLLHRR----SIHSSGLTGDSHSQNILPVSE                 
      300       310           320       330                        

>>CCDS197.1 HTR6 gene_id:3362|Hs108|chr1                  (440 aa)
 initn: 193 init1: 149 opt: 307  Z-score: 313.9  bits: 67.0 E(32554): 3.6e-11
Smith-Waterman score: 307; 25.7% identity (57.0% similar) in 358 aa overlap (4-343:25-362)

                                    10        20         30        
pF1KE9                      MGPGEALLAGLLVMVLAVALLSNALVL-LCCAYSAELRT
                               : . .:. : .:.:..  .:.:.. : :.  : ::.
CCDS19 MVPEPGPTANSTPAWGAGPPSAPGGSGWVAAALCVVIALTAAANSLLIALICTQPA-LRN
               10        20        30        40        50          

       40        50        60        70        80        90        
pF1KE9 RASGVLLVNLSLGHLLLAALDMPFTLLGVMRGRTPSAPGACQVIGFLDTFLASNAALSVA
        .:. .::.:  . :... . :: ..:... ::   : : : .   .:..  : . :.. 
CCDS19 -TSNFFLVSLFTSDLMVGLVVMPPAMLNALYGRWVLARGLCLLWTAFDVMCCSASILNLC
       60        70        80        90       100       110        

      100       110       120        130       140         150     
pF1KE9 ALSADQWLAVGFPLRYAGRLRP-RYAGLLLGCAWGQSLAFSGAALGCSW--LGYSSAFAS
        .: :..: .  ::::  :. : :  .:.:: ::. .   :   :  .:  ::..     
CCDS19 LISLDRYLLILSPLRYKLRMTPLRALALVLG-AWSLAALASFLPLLLGWHELGHAR----
      120       130       140        150       160       170       

         160        170       180         190       200       210  
pF1KE9 CSLRLPPEPERPRF-AAFTATLHAVG--FVLPLAVLCLTSLQVHRVARSHCQRMDTVTM-
            :: : . :. :..  .: : :  : :: ...:.:  ..  .::..  .. ..:  
CCDS19 -----PPVPGQCRLLASLPFVLVASGLTFFLPSGAICFTYCRILLAARKQAVQVASLTTG
                180       190       200       210       220        

                   220           230       240       250       260 
pF1KE9 ------KALALLADLHPSVR----QRCLIQQKRRRHRATRKIGIAIATFLICFAPYVMTR
             ..: .    .:.:.    .:   ...:.  .:.  .:: .. :.. . :. .. 
CCDS19 MASQASETLQVPRTPRPGVESADSRRLATKHSRKALKASLTLGILLGMFFVTWLPFFVAN
      230       240       250       260       270       280        

             270       280       290       300       310       320 
pF1KE9 LAELVPFVTVNAQWGILSKCLTYSKAVADPFTYSLLRRPFRQVLAGMVHRLLKRTPRPAS
       ... :      . . .:.  : : ... .:. : :. : :...:.    :.:   : :  
CCDS19 IVQAVCDCISPGLFDVLTW-LGYCNSTMNPIIYPLFMRDFKRALG----RFL---PCPRC
      290       300        310       320       330              340

             330       340       350       360                     
pF1KE9 THDSSLDVAGMVHQLLKRTPRPASTHNGSVDTENDSCLQQTH                  
        .. . ..:.   .  .  :::                                      
CCDS19 PRERQASLASPSLRTSHSGPRPGLSLQQVLPLPLPPDSDSDSDAGSGGSSGLRLTAQLLL
              350       360       370       380       390       400




363 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:33:05 2016 done: Sun Nov  6 17:33:06 2016
 Total Scan time:  2.550 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]